RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 GIPC3Q8TF64 312 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 TFB1MQ8WVM0 346 aaKnown RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 HTR3CQ8WXA8 447 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 IFT81Q8WYA0 676 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ART4Q93070 314 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 LRRC45Q96CN5 670 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 HAUS1Q96CS2 278 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ZNF501Q96CX3 271 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CNRIP1Q96F85 164 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 RPRD1AQ96P16 312 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 OLFM3Q96PB7 478 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 QKIQ96PU8 341 aaKnown RBP eCLIP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 F2RL3Q96RI0 385 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 LGMNQ99538 433 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 TRIM51Q9BSJ1 452 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 PINK1Q9BXM7 581 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 B3GAT2Q9NPZ5 323 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ZDHHC18Q9NUE0 388 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ATAD3AQ9NVI7 634 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 WWOXQ9NZC7 414 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 LSM7Q9UK45 103 aaKnown RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 VANGL2Q9ULK5 521 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ICAM5Q9UMF0 924 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 SNX24Q9Y343 169 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 PYGO1Q9Y3Y4 419 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CPQQ9Y646 472 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 RNF215Q9Y6U7 377 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 OBSL1O75147 1896 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 NOTCH4Q99466 2003 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 MYO7AQ13402 2215 aa3.4□□□□□ -1.86
PTCD3-216ENST00000487043 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 IQCMA0A1B0GVH7 501 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 SLCO1B7G3V0H7 640 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 DNALI1O14645 258 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TRANK1O15050 2925 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ANGPT2O15123 496 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 CFLARO15519 480 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TNFSF12O43508 249 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ATP8B1O43520 1251 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 MFSD11O43934 449 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 MTRF1O75570 445 aaKnown RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 CEACAM4O75871 244 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 HPRP00739 348 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 FHP07954 510 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ZSCAN5DPP0CG00 497 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 HOXB8P17481 243 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 AOC1P19801 751 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 PTPN6P29350 595 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 PDHA2P29803 388 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 OR1E1P30953 314 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 FCGR2BP31994 310 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ADRA1AP35348 466 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TRIM23P36406 574 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 DLSTP36957 453 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 HNMTP50135 292 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ARFIP1P53367 373 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 PLTPP55058 493 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 RAG2P55895 527 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 GNB1P62873 340 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 NTHL1P78549 312 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 HYAL1Q12794 435 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 CALCOCO2Q13137 446 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 RIGQ13278 110 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF177Q13360 481 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 NFATC2Q13469 925 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 SLC17A1Q14916 467 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TRIP10Q15642 601 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TRIP13Q15645 432 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 KCTD19Q17RG1 926 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 PARP6Q2NL67 630 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 HKDC1Q2TB90 917 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF876PQ49A33 203 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TEX44Q53QW1 395 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TMEM41BQ5BJD5 291 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TCEAL5Q5H9L2 206 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 BEND6Q5SZJ8 279 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 EMBQ6PCB8 327 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 RFWD3Q6PCD5 774 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 Q6ZRP5 223 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 PID1Q7Z2X4 250 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 GOLGA7Q7Z5G4 137 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 SETD3Q86TU7 594 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 CENPLQ8N0S6 344 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 NPWQ8N729 165 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 DENND6BQ8NEG7 585 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 OR6F1Q8NGZ6 308 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 WDR36Q8NI36 951 aaKnown RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ITFG1Q8TB96 612 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 FBXO25Q8TCJ0 367 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 AENQ8WTP8 325 aaKnown RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TMEM190Q8WZ59 177 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 NUP205Q92621 2012 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 OTUB2Q96DC9 234 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TCEAL4Q96EI5 215 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TMA16Q96EY4 203 aaKnown RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 SNF8Q96H20 258 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 CELF6Q96J87 481 aaKnown RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF300Q96RE9 604 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 VAT1Q99536 393 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TXN2Q99757 166 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms