RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ERVMER34-1Q9H9K5 563 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 PLSCR3Q9NRY6 295 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 THADAQ6YHU6 1953 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 SDC3O75056 442 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 PEPDP12955 493 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 MAGEB1P43366 347 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 PPP3R1P63098 170 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 CD83Q01151 205 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 RAB30Q15771 203 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 ZCCHC12Q6PEW1 402 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 RTL4Q6ZR62 310 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 FAM98AQ8NCA5 519 aaKnown RBP17.55■□□□□ 0.4
VIM-203ENST00000469543 GHSRQ92847 366 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 KLHDC7BQ96G42 594 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 NMNAT3Q96T66 252 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 CTRCQ99895 268 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 ORAI3Q9BRQ5 295 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 OR10H1Q9Y4A9 318 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 TP53BP1Q12888 1972 aaPredicted RBP17.55■□□□□ 0.4
VIM-203ENST00000469543 A8MUA0 341 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 RGS9O75916 674 aaPredicted RBP17.55■□□□□ 0.4
VIM-203ENST00000469543 WNT1P04628 370 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 GRPRP30550 384 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 RACK1P63244 317 aaKnown RBP17.55■□□□□ 0.4
VIM-203ENST00000469543 TMEM44Q2T9K0 475 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 ASB18Q6ZVZ8 466 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 ABHD4Q8TB40 342 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 NECTIN4Q96NY8 510 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 TRIM36Q9NQ86 728 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 EXTL2Q9UBQ6 330 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 RASD1Q9Y272 281 aa17.55■□□□□ 0.4
VIM-203ENST00000469543 SPAG17Q6Q759 2223 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 SLC22A31A6NKX4 558 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 IDSB3KWA1 339 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 HCN1O60741 890 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 EIF4EP06730 217 aaKnown RBP17.54■□□□□ 0.4
VIM-203ENST00000469543 MYL9P24844 172 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 ZNHIT3Q15649 155 aaPredicted RBP17.54■□□□□ 0.4
VIM-203ENST00000469543 C19orf18Q8NEA5 215 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 SLC35B4Q969S0 331 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 ZNF426Q9BUY5 554 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 ASB6Q9NWX5 421 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 IGHV5-51A0A0C4DH38 117 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 FMO6PO60774 539 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 ZNF3P17036 446 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 GAS6Q14393 721 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 MANEAQ5SRI9 462 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 TRIQKQ629K1 86 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 CBLN3Q6UW01 205 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 SAMD12Q8N8I0 201 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 ENKURQ8TC29 256 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 TGM7Q96PF1 710 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 NDC1Q9BTX1 674 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 YIPF2Q9BWQ6 316 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 SPRTNQ9H040 489 aaPredicted RBP17.54■□□□□ 0.4
VIM-203ENST00000469543 PRTFDC1Q9NRG1 225 aa17.54■□□□□ 0.4
VIM-203ENST00000469543 GPR3P46089 330 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 RNASE12Q5GAN4 147 aaKnown RBP17.53■□□□□ 0.4
VIM-203ENST00000469543 MTFR2Q6P444 385 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 VASH1Q7L8A9 365 aaPredicted RBP17.53■□□□□ 0.4
VIM-203ENST00000469543 BCORP1Q8N888 145 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 PGLYRP3Q96LB9 341 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 TSSK2Q96PF2 358 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 DEPDC7Q96QD5 511 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 A0A1W2PPC4 97 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 OIP5O43482 229 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 CSTAP01040 98 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 MT-ND5P03915 603 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 RPL4P36578 427 aaKnown RBP17.53■□□□□ 0.4
VIM-203ENST00000469543 FOXL2P58012 376 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 PRTGQ2VWP7 1150 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 LCN1P1Q5VSP4 162 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 ESPNLQ6ZVH7 1005 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 RDH10Q8IZV5 341 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.53■□□□□ 0.4
VIM-203ENST00000469543 RASD2Q96D21 266 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 LMF2Q9BU23 707 aaKnown RBP17.53■□□□□ 0.4
VIM-203ENST00000469543 OR10A5Q9H207 317 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 RNF121Q9H920 327 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 POLHQ9Y253 713 aa17.53■□□□□ 0.4
VIM-203ENST00000469543 TNRC18O15417 2968 aaPredicted RBP17.52■□□□□ 0.4
VIM-203ENST00000469543 CDC14CA4D256 554 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 OR5K4A6NMS3 321 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 CTNSO60931 367 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 RNH1P13489 461 aaKnown RBP17.52■□□□□ 0.4
VIM-203ENST00000469543 HK1P19367 917 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 PSMB10P40306 273 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 OTPQ5XKR4 325 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 OR4D9Q8NGE8 314 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 UPRTQ96BW1 309 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 AHCYL2Q96HN2 611 aaKnown RBP17.52■□□□□ 0.4
VIM-203ENST00000469543 FRMD6Q96NE9 622 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 DGAT2Q96PD7 388 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 GFM1Q96RP9 751 aaKnown RBP17.52■□□□□ 0.4
VIM-203ENST00000469543 PDCD1LG2Q9BQ51 273 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 JAM3Q9BX67 310 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 C8orf33Q9H7E9 229 aaPredicted RBP17.52■□□□□ 0.4
VIM-203ENST00000469543 PRDM9Q9NQV7 894 aa17.52■□□□□ 0.4
VIM-203ENST00000469543 SEC14L5O43304 696 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 THBS2P35442 1172 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms