RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 DNAJC14Q6Y2X3 702 aaPredicted RBP15.52■□□□□ 0.08
COL7A1-206ENST00000466591 FRRS1Q6ZNA5 592 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 PEX5LQ8IYB4 626 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 DEPDC4Q8N2C3 294 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 KBTBD8Q8NFY9 601 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 HS6ST2Q96MM7 605 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 CCDC115Q96NT0 180 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 TRNT1Q96Q11 434 aaKnown RBP15.52■□□□□ 0.08
COL7A1-206ENST00000466591 TMEM204Q9BSN7 226 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 NAA11Q9BSU3 229 aaPredicted RBP15.52■□□□□ 0.08
COL7A1-206ENST00000466591 EXOSC3Q9NQT5 275 aaKnown RBP15.52■□□□□ 0.08
COL7A1-206ENST00000466591 AIG1Q9NVV5 245 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 THAP1Q9NVV9 213 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 UPB1Q9UBR1 384 aa15.52■□□□□ 0.08
COL7A1-206ENST00000466591 NF1P21359 2839 aa15.52■□□□□ 0.07
COL7A1-206ENST00000466591 NUP214P35658 2090 aaPredicted RBP15.52■□□□□ 0.07
COL7A1-206ENST00000466591 TMEM120BA0PK00 339 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 SLCO1B7G3V0H7 640 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 ETV2O00321 342 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-206ENST00000466591 HMGN4O00479 90 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 RFXANKO14593 260 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 HDAC3O15379 428 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 PMS2P2O95744 297 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 GUSBP08236 651 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 IDUAP35475 653 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 CLK1P49759 484 aaKnown RBP15.51■□□□□ 0.07
COL7A1-206ENST00000466591 POLR2HP52434 150 aaKnown RBP15.51■□□□□ 0.07
COL7A1-206ENST00000466591 CDH11P55287 796 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 COPZ1P61923 177 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 SLC35A1P78382 337 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 SYPL1Q16563 259 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 CLEC12BQ2HXU8 276 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 TIMM23BQ5SRD1 257 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 FBXW9Q5XUX1 488 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 OGFOD2Q6N063 350 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 CASP12Q6UXS9 341 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 P2RY8Q86VZ1 359 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 CMIPQ8IY22 773 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 GLB1L3Q8NCI6 653 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-206ENST00000466591 PIWIL2Q8TC59 973 aaKnown RBP15.51■□□□□ 0.07
COL7A1-206ENST00000466591 PMM1Q92871 262 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 CCDC106Q9BWC9 280 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 OR11A1Q9GZK7 315 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 WDR55Q9H6Y2 383 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-206ENST00000466591 RMND5AQ9H871 391 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 ZNF701Q9NV72 531 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-206ENST00000466591 ASB6Q9NWX5 421 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 TMEM181Q9P2C4 612 aa15.51■□□□□ 0.07
COL7A1-206ENST00000466591 TMED7-TICAM2A0A0A6YYA0 188 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 CFAP73A6NFT4 308 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 CLDN24A6NM45 220 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 ABCD4O14678 606 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 DNPH1O43598 174 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 TP53P04637 393 aaPredicted RBP15.5■□□□□ 0.07
COL7A1-206ENST00000466591 DBIP07108 87 aaKnown RBP15.5■□□□□ 0.07
COL7A1-206ENST00000466591 NID1P14543 1247 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 IDO1P14902 403 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 IGHV1-2P23083 117 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 CXCR1P25024 350 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 EPHA3P29320 983 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 CDKN1AP38936 164 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 CRATP43155 626 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 PHC1P78364 1004 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 ETFDHQ16134 617 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 ZNF672Q499Z4 452 aaPredicted RBP15.5■□□□□ 0.07
COL7A1-206ENST00000466591 SLC22A25Q6T423 547 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 TMEM108Q6UXF1 575 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 LRRC74BQ6ZQY2 392 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 ANKFN1Q8N957 763 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 FAM71CQ8NEG0 241 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 OR52N5Q8NH56 324 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 CNOT9Q92600 299 aaKnown RBP15.5■□□□□ 0.07
COL7A1-206ENST00000466591 ZNF524Q96C55 264 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 INPP5KQ9BT40 448 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 SAP130Q9H0E3 1048 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 MTHFD2LQ9H903 347 aaPredicted RBP15.5■□□□□ 0.07
COL7A1-206ENST00000466591 CISD1Q9NZ45 108 aaKnown RBP15.5■□□□□ 0.07
COL7A1-206ENST00000466591 CALML5Q9NZT1 146 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 P2RX2Q9UBL9 471 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 HAO1Q9UJM8 370 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 TMED7Q9Y3B3 224 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 HEATR5AQ86XA9 2040 aa15.5■□□□□ 0.07
COL7A1-206ENST00000466591 ZNF469Q96JG9 3925 aaPredicted RBP15.49■□□□□ 0.07
COL7A1-206ENST00000466591 SDHDO14521 159 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 EIF1BO60739 113 aaKnown RBP15.49■□□□□ 0.07
COL7A1-206ENST00000466591 DNAJA2O60884 412 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 SCN2BO60939 215 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 ERLIN1O75477 346 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 SLC22A3O75751 556 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 KRT33AO76009 404 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 IL6P05231 212 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 ALDOCP09972 364 aaKnown RBP15.49■□□□□ 0.07
COL7A1-206ENST00000466591 NCF2P19878 526 aaPredicted RBP15.49■□□□□ 0.07
COL7A1-206ENST00000466591 TACR3P29371 465 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 FUT5Q11128 374 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 PDK3Q15120 406 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 C6orf10Q5SRN2 563 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 ABLIM2Q6H8Q1 611 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 KLHL24Q6TFL4 600 aa15.49■□□□□ 0.07
COL7A1-206ENST00000466591 ZNF440Q8IYI8 595 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms