RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 OR14A16Q8NHC5 309 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 CCDC74BQ96LY2 380 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 CDADC1Q9BWV3 514 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 HOXD1Q9GZZ0 328 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 APMAPQ9HDC9 416 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 NANSQ9NR45 359 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 URB1O60287 2271 aaKnown RBP12.52□□□□□ -0.4
CLK3-203ENST00000454830 TTC36A6NLP5 189 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 IDSB3KWA1 339 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 J3QLW9 94 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 BHLHE40O14503 412 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 AKAP8O43823 692 aaKnown RBP12.52□□□□□ -0.41
CLK3-203ENST00000454830 ZNF19P17023 458 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 UGT2B10P36537 528 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 RPS19P39019 145 aaKnown RBP12.52□□□□□ -0.41
CLK3-203ENST00000454830 PWWP2BQ6NUJ5 590 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 NIPAL3Q6P499 406 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 SYT14Q8NB59 555 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 ATP6V1C2Q8NEY4 427 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 ZNF721Q8TF20 911 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 C3orf49Q96BT1 292 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 OMA1Q96E52 524 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 TRMT61AQ96FX7 289 aaKnown RBP12.52□□□□□ -0.41
CLK3-203ENST00000454830 VMP1Q96GC9 406 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 ZNF768Q9H5H4 540 aaKnown RBP12.52□□□□□ -0.41
CLK3-203ENST00000454830 PILRBQ9UKJ0 227 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 CASKO14936 926 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 SLC25A12O75746 678 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 IL33O95760 270 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 HIST1H2ABP04908 130 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 CXCR1P25024 350 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 GTF2E2P29084 291 aaKnown RBP12.52□□□□□ -0.41
CLK3-203ENST00000454830 DNASE1L3Q13609 305 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 SLC25A30Q5SVS4 291 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 FAM69BQ5VUD6 431 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 WBP2NLQ6ICG8 309 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 ARL9Q6T311 187 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 HIST3H2AQ7L7L0 130 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 PRSS42Q7Z5A4 293 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 KMT5CQ86Y97 462 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 C9orf40Q8IXQ3 194 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 CMIPQ8IY22 773 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 CLDN22Q8N7P3 220 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 SLC38A9Q8NBW4 561 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 HIST1H2ACQ93077 130 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 C8orf44Q96CB5 159 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 ALG8Q9BVK2 526 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 FGF20Q9NP95 211 aaPredicted RBP12.52□□□□□ -0.41
CLK3-203ENST00000454830 CMC2Q9NRP2 79 aa12.52□□□□□ -0.41
CLK3-203ENST00000454830 AHCTF1Q8WYP5 2266 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 TCRBV16S1A1N1A0A5B0 115 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 CD8B2A6NJW9 211 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 MCIDASD6RGH6 385 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 CLEC2LP0C7M8 214 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 CD8BP10966 210 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 TBXA2RP21731 343 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 AZGP1P25311 298 aaKnown RBP12.51□□□□□ -0.41
CLK3-203ENST00000454830 TACR3P29371 465 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 EBPQ15125 230 aaKnown RBP12.51□□□□□ -0.41
CLK3-203ENST00000454830 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.51□□□□□ -0.41
CLK3-203ENST00000454830 MARCH9Q86YJ5 346 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 ZNF440Q8IYI8 595 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 SAP25Q8TEE9 199 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 KCTD7Q96MP8 289 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 GFM1Q96RP9 751 aaKnown RBP12.51□□□□□ -0.41
CLK3-203ENST00000454830 CHRNA10Q9GZZ6 450 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 AKIP1Q9NQ31 210 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 ERVK13-1Q9NX77 482 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 SLC22A31A6NKX4 558 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 NPIPB9F8W1W9 429 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 F13BP05160 661 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 IFI6P09912 130 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 PEPDP12955 493 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 AQP2P41181 271 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 CENPAP49450 140 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 HCCSP53701 268 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 CAV3P56539 151 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 EFNB1P98172 346 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 HNRNPA0Q13151 305 aaKnown RBP12.51□□□□□ -0.41
CLK3-203ENST00000454830 ARHGAP11AQ6P4F7 1023 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 LSMEM1Q8N8F7 131 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 IFI44Q8TCB0 444 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 WWTR1Q9GZV5 400 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 ISG20L2Q9H9L3 353 aaKnown RBP12.51□□□□□ -0.41
CLK3-203ENST00000454830 NDUFB11Q9NX14 153 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 FRG2CA6NGY1 282 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 GDF9O60383 454 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 SNX4O95219 450 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 HIST1H1CP16403 213 aaKnown RBP12.51□□□□□ -0.41
CLK3-203ENST00000454830 GRPRP30550 384 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 RBM34P42696 430 aaKnown RBP12.51□□□□□ -0.41
CLK3-203ENST00000454830 RORCP51449 518 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 EFNA3P52797 238 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 EMP2P54851 167 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 NRG3P56975 720 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 SLC3A1Q07837 685 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 ZSWIM7Q19AV6 140 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 KLHL26Q53HC5 615 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 MRGPREQ86SM8 312 aa12.51□□□□□ -0.41
CLK3-203ENST00000454830 PPP1R3BQ86XI6 285 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms