RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 ZIM3Q96PE6 472 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 RHNO1Q9BSD3 238 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 SAP130Q9H0E3 1048 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 AKTIPQ9H8T0 292 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 POLE3Q9NRF9 147 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 CHRNA9Q9UGM1 479 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 PCDHGB4Q9UN71 923 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 SLC35A3Q9Y2D2 325 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 HDGFL3Q9Y3E1 203 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 WDR45Q9Y484 360 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 SLC25A15Q9Y619 301 aa13.05□□□□□ -0.32
RPS28-201ENST00000417088 SPIN1Q9Y657 262 aaPredicted RBP13.05□□□□□ -0.32
RPS28-201ENST00000417088 IGHV4-30-2A0A087WSY4 118 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 A0A096LNT2 108 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 A0A1W2PR80 420 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 CIB4A0PJX0 185 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 PRAMEF27A3QJZ7 478 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 CCT8L1PA6NM43 557 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 GPR171O14626 319 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 ANKRD28O15084 1053 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 CPSF4O95639 269 aaKnown RBP13.04□□□□□ -0.32
RPS28-201ENST00000417088 PMS2P2O95744 297 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 UQCRC2P22695 453 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 PTAFRP25105 342 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 TTKP33981 857 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 SLC16A1P53985 500 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 IRX1P78414 480 aaPredicted RBP13.04□□□□□ -0.32
RPS28-201ENST00000417088 SPOCK1Q08629 439 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 IFFO1Q0D2I5 559 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 PDCD2Q16342 344 aaPredicted RBP13.04□□□□□ -0.32
RPS28-201ENST00000417088 ATAD3BQ5T9A4 648 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 SAXO2Q658L1 398 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 HMBOX1Q6NT76 420 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 EMBQ6PCB8 327 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 SLC22A25Q6T423 547 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 TMEM108Q6UXF1 575 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 FRRS1Q6ZNA5 592 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 GRINAQ7Z429 371 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 HMGN2P46Q86SG4 172 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 ANKRD46Q86W74 232 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 ADGRG3Q86Y34 549 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 NUDCD3Q8IVD9 361 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 CCDC103Q8IW40 242 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 ROPN1LQ96C74 230 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 ZHX1-C8orf76Q96EF9 292 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 CACNG6Q9BXT2 260 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 ROPN1BQ9BZX4 212 aaPredicted RBP13.04□□□□□ -0.32
RPS28-201ENST00000417088 OR11A1Q9GZK7 315 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 ROPN1Q9HAT0 212 aaPredicted RBP13.04□□□□□ -0.32
RPS28-201ENST00000417088 ASB6Q9NWX5 421 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 MGAT4BQ9UQ53 548 aa13.04□□□□□ -0.32
RPS28-201ENST00000417088 PRSS51A0A1B0GVH4 220 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 CLDN24A6NM45 220 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 DNPH1O43598 174 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 GPRIN2O60269 458 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 CD40P25942 277 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 CLK1P49759 484 aaKnown RBP13.03□□□□□ -0.32
RPS28-201ENST00000417088 FOXG1P55316 489 aaPredicted RBP13.03□□□□□ -0.32
RPS28-201ENST00000417088 KCNJ10P78508 379 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 CHRNEQ04844 493 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 GABRA6Q16445 453 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 B3GLCTQ6Y288 498 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 LSRQ86X29 649 aaPredicted RBP13.03□□□□□ -0.32
RPS28-201ENST00000417088 ZNF781Q8N8C0 355 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 OR10H5Q8NGA6 315 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 PIGXQ8TBF5 258 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 PKNOX2Q96KN3 472 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 ADAD1Q96M93 576 aaKnown RBP13.03□□□□□ -0.32
RPS28-201ENST00000417088 MUS81Q96NY9 551 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 DHRS9Q9BPW9 319 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 REPIN1Q9BWE0 567 aaKnown RBP13.03□□□□□ -0.32
RPS28-201ENST00000417088 DPY30Q9C005 99 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 EXOSC3Q9NQT5 275 aaKnown RBP13.03□□□□□ -0.32
RPS28-201ENST00000417088 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.03□□□□□ -0.32
RPS28-201ENST00000417088 CBLN4Q9NTU7 201 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 TAS2R16Q9NYV7 291 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 MALT1Q9UDY8 824 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 POU2F3Q9UKI9 436 aa13.03□□□□□ -0.32
RPS28-201ENST00000417088 CUBNO60494 3623 aa13.02□□□□□ -0.32
RPS28-201ENST00000417088 A8MV72 311 aaPredicted RBP13.02□□□□□ -0.33
RPS28-201ENST00000417088 MRPL33O75394 65 aaKnown RBP13.02□□□□□ -0.33
RPS28-201ENST00000417088 C1QCP02747 245 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 SERPINE1P05121 402 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 ITGA5P08648 1049 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 DHRS4L1P0CG22 281 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 CCNA2P20248 432 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 FKBP2P26885 142 aaKnown RBP13.02□□□□□ -0.33
RPS28-201ENST00000417088 IDH2P48735 452 aaKnown RBP13.02□□□□□ -0.33
RPS28-201ENST00000417088 NUDT6P53370 316 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 OR2B6P58173 313 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 VSNL1P62760 191 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 H3F3AP84243 136 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 CASP8Q14790 479 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 ANXA8L1Q5VT79 327 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 PODNL1Q6PEZ8 512 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 KLHL17Q6TDP4 642 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 MUC15Q8N387 334 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 ARFGAP2Q8N6H7 521 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 OR52E4Q8NGH9 312 aa13.02□□□□□ -0.33
RPS28-201ENST00000417088 CNOT9Q92600 299 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms