RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 LHX6Q9UPM6 363 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 SF3B6Q9Y3B4 125 aaKnown RBP12.01□□□□□ -0.49
PTPRN-202ENST00000409251 PPIL1Q9Y3C6 166 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 ZNF175Q9Y473 711 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 AGPAT2O15120 278 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 CREBL2O60519 120 aaPredicted RBP12.01□□□□□ -0.49
PTPRN-202ENST00000409251 STX11O75558 287 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 NMBP08949 121 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 COL9A1P20849 921 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 UQCRC2P22695 453 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 AKR1C3P42330 323 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 PRLHRP49683 370 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 CDK3Q00526 305 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 FGL1Q08830 312 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 IRF4Q15306 451 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 ZNF322Q6U7Q0 402 aaPredicted RBP12.01□□□□□ -0.49
PTPRN-202ENST00000409251 CHRDL2Q6WN34 429 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 MSANTD1Q6ZTZ1 278 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 FAM129CQ86XR2 697 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 FAM219AQ8IW50 185 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 SDR16C5Q8N3Y7 309 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 FAM160A2Q8N612 972 aaPredicted RBP12.01□□□□□ -0.49
PTPRN-202ENST00000409251 ADAMTS14Q8WXS8 1223 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 SLC38A3Q99624 504 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 CMSS1Q9BQ75 279 aaKnown RBP12.01□□□□□ -0.49
PTPRN-202ENST00000409251 DPH7Q9BTV6 452 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 RHBGQ9H310 441 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 P2RX2Q9UBL9 471 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 GNG8Q9UK08 70 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 A0A1W2PS29 197 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 FAM157BP0CG42 384 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 CCR8P51685 355 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 BTG1P62324 171 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 TAF13Q15543 124 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 TMEM196Q5HYL7 178 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 ENPP7Q6UWV6 458 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 FCRLAQ7L513 359 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 OAFQ86UD1 273 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 UBTD2Q8WUN7 234 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 SNX33Q8WV41 574 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 CHTF18Q8WVB6 975 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 SMPDL3AQ92484 453 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 NDC1Q9BTX1 674 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 CYSLTR2Q9NS75 346 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 ASF1BQ9NVP2 202 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 GDE1Q9NZC3 331 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 CLEC1BQ9P126 229 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 USP36Q9P275 1121 aaKnown RBP12.01□□□□□ -0.49
PTPRN-202ENST00000409251 PIAS3Q9Y6X2 628 aa12.01□□□□□ -0.49
PTPRN-202ENST00000409251 IGLV3-16A0A075B6K0 115 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 GFYI3L273 518 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 FLRT2O43155 660 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 RECKO95980 971 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 RLN2P04090 185 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 BTCP35070 178 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 PTH2RP49190 550 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 ID2Q02363 134 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 MINDY4Q4G0A6 757 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 RAB12Q6IQ22 244 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 GRHL2Q6ISB3 625 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 OR56B4Q8NH76 319 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 OR10G6Q8NH81 332 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 PATE1Q8WXA2 126 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 HCAR1Q9BXC0 346 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 TPSD1Q9BZJ3 242 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 SLC6A20Q9NP91 592 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 TREM1Q9NP99 234 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 LYARQ9NX58 379 aaKnown RBP12□□□□□ -0.49
PTPRN-202ENST00000409251 BABAM2Q9NXR7 383 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 A4GNTQ9UNA3 340 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 KCNE3Q9Y6H6 103 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 HMGN4O00479 90 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 SLCO2B1O94956 709 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 SLC35G4P0C7Q5 338 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 ATF1P18846 271 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 CBX5P45973 191 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 C1orf61Q13536 156 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 OCLNQ16625 522 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 CCNJQ5T5M9 372 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 GSG1LQ6UXU4 331 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 DNAAF1Q8NEP3 725 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 OR52L1Q8NGH7 329 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 YIPF5Q969M3 257 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 GAS2L1Q99501 681 aaPredicted RBP12□□□□□ -0.49
PTPRN-202ENST00000409251 KCNJ15Q99712 375 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 C7orf50Q9BRJ6 194 aaKnown RBP12□□□□□ -0.49
PTPRN-202ENST00000409251 RSPO3Q9BXY4 272 aaPredicted RBP12□□□□□ -0.49
PTPRN-202ENST00000409251 DMRT3Q9NQL9 472 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 ZMAT5Q9UDW3 170 aaKnown RBP12□□□□□ -0.49
PTPRN-202ENST00000409251 SLC27A6Q9Y2P4 619 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 GPR55Q9Y2T6 319 aaPredicted RBP12□□□□□ -0.49
PTPRN-202ENST00000409251 TNRC18O15417 2968 aaPredicted RBP12□□□□□ -0.49
PTPRN-202ENST00000409251 TRAV27A0A087WT01 109 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 MEIKINA0A087WXM9 373 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 SLC5A10A0PJK1 596 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 TMEM200CA6NKL6 621 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 GMFGO60234 142 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 HMGN2P05204 90 aaKnown RBP12□□□□□ -0.49
PTPRN-202ENST00000409251 RAB3AP20336 220 aa12□□□□□ -0.49
PTPRN-202ENST00000409251 S100A11P31949 105 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms