RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GSTA1P08263 222 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 STSP08842 583 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 XRCC1P18887 633 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 IMPDH1P20839 514 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 HOXA9P31269 272 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 SLC1A2P43004 574 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 HLCSP50747 726 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 OR1D5P58170 312 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 SEC61A1P61619 476 aaKnown RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 IFFO1Q0D2I5 559 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 STX5Q13190 355 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 GRB7Q14451 532 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 KIR2DS5Q14953 304 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ALX1Q15699 326 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 UAP1Q16222 522 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 C3AR1Q16581 482 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF74Q16587 644 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 SLC25A52Q3SY17 297 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 TMEM35AQ53FP2 167 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 TCHHL1Q5QJ38 904 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 RNLSQ5VYX0 342 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 SLC16A14Q7RTX9 510 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 MARCH9Q86YJ5 346 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 GPC2Q8N158 579 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ARHGAP18Q8N392 663 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 CSNK1A1LQ8N752 337 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF680Q8NEM1 530 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 B3GNT7Q8NFL0 401 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 DMBX1Q8NFW5 382 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 OR10A7Q8NGE5 316 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 OR5M9Q8NGP3 310 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 OR52E5Q8NH55 327 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ABTB1Q969K4 478 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 SLC6A7Q99884 636 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 SAV1Q9H4B6 383 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 EGLN3Q9H6Z9 239 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ATP13A3Q9H7F0 1226 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 POPDC2Q9HBU9 364 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 CD209Q9NNX6 404 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 DMAP1Q9NPF5 467 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 STMN3Q9NZ72 180 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 PURGQ9UJV8 347 aaKnown RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF221Q9UK13 617 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ZCCHC11Q5TAX3 1644 aaKnown RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 MADDQ8WXG6 1647 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 LILRA5A6NI73 299 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 F5H6K3 240 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CYB561D2O14569 222 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 RFXANKO14593 260 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CASKO14936 926 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MSH4O15457 936 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 KIAA0513O60268 411 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 KRTAP5-8O75690 187 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ETHE1O95571 254 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TSPAN13O95857 204 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TOMM40O96008 361 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 F10P00742 488 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CST4P01036 141 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 IFNA14P01570 189 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SP1P08047 785 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ANXA5P08758 320 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 IGHV4-31P0DP07 118 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 HOXB2P14652 356 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF26P17031 533 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PMCHP20382 165 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 HMGB2P26583 209 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ALDH3A1P30838 453 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 RANBP1P43487 201 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 DNA2P51530 1060 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 UCNP55089 124 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 RAG2P55895 527 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 BACE1P56817 501 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 KCNJ2P63252 427 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ADARB1P78563 741 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 GLO1Q04760 184 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 KLRC3Q07444 240 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CYTH1Q15438 398 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF77Q15935 545 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SGCAQ16586 387 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 HAGHQ16775 308 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SLC5A12Q1EHB4 618 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TP53I3Q53FA7 332 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF691Q5VV52 312 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 GPR107Q5VW38 600 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 C22orf42Q6IC83 251 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PNCKQ6P2M8 343 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 Q6ZSR3 168 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 RFPL4BQ6ZWI9 263 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 Q71RC1 249 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 HPS6Q86YV9 775 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 LINC01561Q8N1V8 128 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CCNYL1Q8N7R7 359 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MAPKAPK5-AS1Q8N8E1 139 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SNX31Q8N9S9 440 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 OR4F6Q8NGB9 312 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 OR52I1Q8NGK6 324 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 OR1B1Q8NGR6 318 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 OR1J1Q8NGS3 322 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 C8orf46Q8TAG6 207 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 DYDC1Q8WWB3 177 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms