RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 EDEM2Q9BV94 578 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 TMPRSS11EQ9UL52 423 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 PCDHGA6Q9Y5G7 932 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 IDSB3KWA1 339 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 LRRTM2O43300 516 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 MSX1P28360 303 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 SLC25A25Q6KCM7 469 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 FBXL6Q8N531 539 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 OR4F15Q8NGB8 312 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 TMEM255BQ8WV15 326 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 THOC3Q96J01 351 aaKnown RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 CITED4Q96RK1 184 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 TMEM9BQ9NQ34 198 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 FBXL3Q9UKT7 428 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 TNS1Q9HBL0 1735 aaKnown RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 DAPP51397 102 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 BMXP51813 675 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 YOD1Q5VVQ6 348 aaPredicted RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 TMEM92Q6UXU6 159 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 OR6T1Q8NGN1 323 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 THAP6Q8TBB0 222 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 SLC2A12Q8TD20 617 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 C1QTNF3Q9BXJ4 246 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 ERVK13-1Q9NX77 482 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 VSX1Q9NZR4 365 aaPredicted RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 ABCD2Q9UBJ2 740 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 AK6Q9Y3D8 172 aaKnown RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 RRP8O43159 456 aaKnown RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 NSA2O95478 260 aaKnown RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 HRGP04196 525 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 ALPLP05186 524 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 CDK1P06493 297 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 PVALBP20472 110 aaPredicted RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 RBPJQ06330 500 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 LRRC18Q8N456 261 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 SLC25A44Q96H78 314 aaPredicted RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 C19orf43Q9BQ61 176 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 MED20Q9H944 212 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 TNFRSF12AQ9NP84 129 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 PLXNB2O15031 1838 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 COL9A1P20849 921 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 CYB561P49447 251 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 BEND4Q6ZU67 534 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 KIAA0907Q7Z7F0 614 aaPredicted RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 TP53I13Q8NBR0 393 aaPredicted RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 OR2A1Q8NGT9 310 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SLC25A18Q9H1K4 315 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SLC6A20Q9NP91 592 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 UCKL1Q9NWZ5 548 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 DOCK5Q9H7D0 1870 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 RBMXP38159 391 aaKnown RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 MAGEA2P43356 314 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 BTG2P78543 158 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 MELKQ14680 651 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 BAIAP2L2Q6UXY1 529 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SIRT6Q8N6T7 355 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 STT3BQ8TCJ2 826 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 PCDHGA10Q9Y5H3 936 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 ATAD5Q96QE3 1844 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 KANTRA0A1W2PQU2 76 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 INMT-MINDY4F8WBC2 141 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 PSMA6P60900 246 aaKnown RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 CAMK2DQ13557 499 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SMN1Q16637 294 aaKnown RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 ARSJQ5FYB0 599 aaPredicted RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 GDF7Q7Z4P5 450 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 CCDC74BQ96LY2 380 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 OR10A2Q9H208 303 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 LOXL2Q9Y4K0 774 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SCN4AP35499 1836 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 PRAMEF25A6NGN4 478 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 LMO7DNF2Z398 122 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SLC43A1O75387 559 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 TSPAN12O95859 305 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 GNRHRP30968 328 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 ZNF385BQ569K4 471 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SPRED2Q7Z698 418 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 RPS19BP1Q86WX3 136 aaKnown RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SFTPA1Q8IWL2 248 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SPARTQ8N0X7 666 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 CHDHQ8NE62 594 aaPredicted RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 C8orf44Q96CB5 159 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 NUDT15Q9NV35 164 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 KLHL9Q9P2J3 617 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 C5orf67F2Z3F1 127 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 SYT5O00445 386 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 ANXA3P12429 323 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 CFL1P23528 166 aaKnown RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 C21orf33P30042 268 aaPredicted RBP13.81□□□□□ -0.2
COL17A1-201ENST00000353479 DLSTP36957 453 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 NIPAL3Q6P499 406 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 STACQ99469 402 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 AMBRA1Q9C0C7 1298 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 MGAT4AQ9UM21 535 aa13.81□□□□□ -0.2
COL17A1-201ENST00000353479 TRAV36DV7A0A075B6V5 113 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 OR7E24Q6IFN5 339 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 DLEU7Q6UYE1 221 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 CA13Q8N1Q1 262 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 KIAA1958Q8N8K9 716 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 TRMT10AQ8TBZ6 339 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms