RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ARL5BQ96KC2 179 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 SGCZQ96LD1 299 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 FEVQ99581 238 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 BDH2Q9BUT1 245 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 PHF3Q92576 2039 aaKnown RBP8.36□□□□□ -1.07
USP4-202ENST00000351842 FAM47E-STBD1D6RA91 191 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 NPIPB9F8W1W9 429 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 TO15178 435 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 THY1P04216 161 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 MST1P26927 711 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 ACAA2P42765 397 aaKnown RBP8.36□□□□□ -1.07
USP4-202ENST00000351842 MFAP5Q13361 173 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 TOP3AQ13472 1001 aaPredicted RBP8.36□□□□□ -1.07
USP4-202ENST00000351842 CBFBQ13951 182 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 ZNF141Q15928 474 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 TMEM236Q5W0B7 351 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 OTPQ5XKR4 325 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 SLC6A19Q695T7 634 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 TIGD3Q6B0B8 471 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 ERMP1Q7Z2K6 904 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 SLC30A8Q8IWU4 369 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 OFCC1Q8IZS5 231 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 OR4K5Q8NGD3 323 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 HOXD1Q9GZZ0 328 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 MED17Q9NVC6 651 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 NDUFA13Q9P0J0 144 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 RAB26Q9ULW5 256 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 A4GNTQ9UNA3 340 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 SLC35A3Q9Y2D2 325 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 HNRNPRO43390 633 aaKnown RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 PGCP20142 388 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 KLK2P20151 261 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 SHC1P29353 583 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 EIF1AXP47813 144 aaKnown RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 PLEKHN1Q494U1 663 aaPredicted RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 SLC35F1Q5T1Q4 408 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 OR10G2Q8NGC3 310 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 OR5W2Q8NH69 310 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 PAQR8Q8TEZ7 354 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 GRIP2Q9C0E4 1043 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 MUC13Q9H3R2 512 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 OSGIN1Q9UJX0 560 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 ICAM5Q9UMF0 924 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 CLEC4AQ9UMR7 237 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 LIPGQ9Y5X9 500 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 CADP27708 2225 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 UTP20O75691 2785 aaKnown RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 EIF1AYO14602 144 aaKnown RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 THBS1P07996 1170 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 ITGA2P17301 1181 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 EPHA2P29317 976 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 PTGDSP41222 190 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 P2RX1P51575 399 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 AGFG1P52594 562 aaKnown RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 NUP107P57740 925 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 SGCBQ16585 318 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 FNDC7Q5VTL7 733 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 ALKBH2Q6NS38 261 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 JMJD6Q6NYC1 403 aaPredicted RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 CCDC80Q76M96 950 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 ZNF550Q7Z398 422 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 IQCF1Q8N6M8 205 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 KTI12Q96EK9 354 aaPredicted RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 NIPSNAP1Q9BPW8 284 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 TTTY12Q9BZ98 90 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 B3GNT4Q9C0J1 378 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 SAP130Q9H0E3 1048 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 PROK2Q9HC23 129 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 SDHAF3Q9NRP4 125 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 GALNT8Q9NY28 637 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 DNAJB9Q9UBS3 223 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 LYVE1Q9Y5Y7 322 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 NCKAP5O14513 1909 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 INTS1Q8N201 2190 aaKnown RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 PKDREJQ9NTG1 2253 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 A0A087WUU8 490 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 SMIM31A0A1B0GVY4 71 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 SUSD5O60279 629 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 SMIM18P0DKX4 95 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 CLDN20P56880 219 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 ST3GAL3Q11203 375 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 OR7A5Q15622 319 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 TMEM251Q8N6I4 163 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 C17orf47Q8NEP4 570 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 TTC9Q92623 222 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 SLC38A4Q969I6 547 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 DHRS1Q96LJ7 313 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 NTN4Q9HB63 628 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 ACER3Q9NUN7 267 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 KLHL13Q9P2N7 655 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 ACAD8Q9UKU7 415 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 BOKQ9UMX3 212 aaPredicted RBP8.35□□□□□ -1.07
USP4-202ENST00000351842 PCDHGA10Q9Y5H3 936 aa8.35□□□□□ -1.07
USP4-202ENST00000351842 TRAPPC13A5PLN9 417 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 PRB1P04280 392 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 F13BP05160 661 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 NGFRP08138 427 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 RHCEP18577 417 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 UGT2B15P54855 530 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms