RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 OAFQ86UD1 273 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 CT55Q8WUE5 264 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 RORBQ92753 470 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 COG8Q96MW5 612 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.79■□□□□ 0.28
USP39-201ENST00000323701 TMEM5Q9Y2B1 443 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 SOCS6O14544 535 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 CYC1P08574 325 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 CDK4P11802 303 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 SLC1A3P43003 542 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 GAS1P54826 345 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 SYT6Q5T7P8 510 aaPredicted RBP16.78■□□□□ 0.28
USP39-201ENST00000323701 POMZP3Q6PJE2 187 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 SLC16A12Q6ZSM3 486 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 SLC46A3Q7Z3Q1 461 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 ZNF563Q8TA94 476 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 RELTQ969Z4 430 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 FUNDC2Q9BWH2 189 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 HCAR1Q9BXC0 346 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 ADAM19Q9H013 955 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 ZNF700Q9H0M5 742 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 CLEC2DQ9UHP7 191 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 ELOA3DA6NLF2 546 aaPredicted RBP16.78■□□□□ 0.28
USP39-201ENST00000323701 NUDT14O95848 222 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 TCN2P20062 427 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 PSMB9P28065 219 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 TRIP6Q15654 476 aaKnown RBP16.78■□□□□ 0.28
USP39-201ENST00000323701 ELOA3BQ3SY89 546 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 C3orf38Q5JPI3 329 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 ZNF362Q5T0B9 420 aaPredicted RBP16.78■□□□□ 0.28
USP39-201ENST00000323701 PLAG1Q6DJT9 500 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 C6orf15Q6UXA7 325 aaPredicted RBP16.78■□□□□ 0.28
USP39-201ENST00000323701 PIP4P1Q86T03 277 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 IGFN1Q86VF2 1251 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 ANKK1Q8NFD2 765 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 ELOA3Q8NG57 546 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 OR10G3Q8NGC4 313 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 OR5L2Q8NGL0 311 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 Q96MT0 163 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 MOGAT1Q96PD6 335 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 SLC38A2Q96QD8 506 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 DOK1Q99704 481 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 DEFB126Q9BYW3 111 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 MED20Q9H944 212 aa16.78■□□□□ 0.28
USP39-201ENST00000323701 HINT3Q9NQE9 182 aaKnown RBP16.78■□□□□ 0.28
USP39-201ENST00000323701 CNOT2Q9NZN8 540 aaKnown RBP16.78■□□□□ 0.28
USP39-201ENST00000323701 WARS2Q9UGM6 360 aaKnown RBP16.78■□□□□ 0.28
USP39-201ENST00000323701 ZFHX4Q86UP3 3567 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 EFCAB10A6NFE3 127 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 M0R082 166 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 MRPS14O60783 128 aaKnown RBP16.77■□□□□ 0.28
USP39-201ENST00000323701 DKK1O94907 266 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 ADORA3P0DMS8 318 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 F8A1P23610 371 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 TTKP33981 857 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 NUBP1P53384 320 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 TUBA3CQ13748 450 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 AADACL4Q5VUY2 407 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 UBE2UQ5VVX9 321 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 PAQR6Q6TCH4 344 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 ERI1Q8IV48 349 aaKnown RBP16.77■□□□□ 0.28
USP39-201ENST00000323701 OR5W2Q8NH69 310 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 OR5M11Q96RB7 305 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 RASL10BQ96S79 203 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 DDA1Q9BW61 102 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 IFT27Q9BW83 186 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 OSGIN1Q9UJX0 560 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 TCFL5Q9UL49 500 aa16.77■□□□□ 0.28
USP39-201ENST00000323701 CDC40O60508 579 aaKnown RBP eCLIP16.77■□□□□ 0.27
USP39-201ENST00000323701 EIF4E2O60573 245 aaKnown RBP16.77■□□□□ 0.27
USP39-201ENST00000323701 FOLR3P41439 243 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 SLC9A3P48764 834 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 LTBQ06643 244 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 INPP5JQ15735 1006 aaPredicted RBP16.77■□□□□ 0.27
USP39-201ENST00000323701 TBCEQ15813 527 aaPredicted RBP16.77■□□□□ 0.27
USP39-201ENST00000323701 C1QL3Q5VWW1 255 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 B3GLCTQ6Y288 498 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 LNX2Q8N448 690 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 SVOPQ8N4V2 548 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 GPR119Q8TDV5 335 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 KTI12Q96EK9 354 aaPredicted RBP16.77■□□□□ 0.27
USP39-201ENST00000323701 SGTBQ96EQ0 304 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 ZNF160Q9HCG1 818 aa16.77■□□□□ 0.27
USP39-201ENST00000323701 ZC3H12DA2A288 527 aaKnown RBP16.76■□□□□ 0.27
USP39-201ENST00000323701 KDM4EB2RXH2 506 aaPredicted RBP16.76■□□□□ 0.27
USP39-201ENST00000323701 RCBTB2O95199 551 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 PPP1R3DO95685 299 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 PIPP12273 146 aaPredicted RBP16.76■□□□□ 0.27
USP39-201ENST00000323701 COL28A1Q2UY09 1125 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 SHFQ7M4L6 423 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 PPP1R32Q7Z5V6 425 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 CPOQ8IVL8 374 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 DEFB124Q8NES8 71 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 RNF138Q8WVD3 245 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 TAPBPLQ9BX59 468 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 CDCA4Q9BXL8 241 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 NCDNQ9UBB6 729 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 RPL36Q9Y3U8 105 aaKnown RBP16.76■□□□□ 0.27
USP39-201ENST00000323701 CFAP47Q6ZTR5 3102 aa16.76■□□□□ 0.27
USP39-201ENST00000323701 MCIDASD6RGH6 385 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms