RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 BLOC1S1P78537 153 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 MRPS10P82664 201 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 FABP5Q01469 135 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 IFITM2Q01629 132 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 OC90Q02509 493 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 EXOSC2Q13868 293 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 FAM209AQ5JX71 171 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 KIAA0895LQ68EN5 471 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 ACSM5Q6NUN0 579 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 ZCCHC12Q6PEW1 402 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 FOXRED2Q8IWF2 684 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 OR6V1Q8N148 313 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 BOLLQ8N9W6 283 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 IL17RCQ8NAC3 791 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 ZNF740Q8NDX6 193 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 OR6T1Q8NGN1 323 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 NEURL3Q96EH8 262 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 SFXN2Q96NB2 322 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 DDOQ99489 341 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 ZNF350Q9GZX5 532 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 METTL8Q9H825 291 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 ERVK-19Q9WJR5 959 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 MEMO1Q9Y316 297 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 BDP1A6H8Y1 2624 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 VEGFCP49767 419 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 PHF19Q5T6S3 580 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 RNF165Q6ZSG1 346 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 GTPBP8Q8N3Z3 284 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 ZNF527Q8NB42 609 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 OR6N2Q8NGY6 317 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 OR52N1Q8NH53 320 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 THRSPQ92748 146 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 SLC25A18Q9H1K4 315 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 KLF15Q9UIH9 416 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 PRSS38A1L453 326 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 TRABD2BA6NFA1 517 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 C2CD4DB7Z1M9 353 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 PRAMEF2O60811 474 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 PPP1R3DO95685 299 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 TGM6O95932 706 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 GYPBP06028 91 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 CAMK2BQ13554 666 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 TPBGQ13641 420 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 KIAA0040Q15053 153 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 METRNLQ641Q3 311 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 KLHDC8AQ8IYD2 350 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 ST8SIA4Q92187 359 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 TEX101Q9BY14 249 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 ACTRT3Q9BYD9 372 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 MED17Q9NVC6 651 aa10.73□□□□□ -0.69
CLSTN3-201ENST00000266546 GREB1Q4ZG55 1949 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 TRAV18A0A075B6X5 111 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 CLDN4O14493 209 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 CDC40O60508 579 aaKnown RBP eCLIP10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 ZNF823P16415 610 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 MC3RP41968 323 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 ZC3H14Q6PJT7 736 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 TEX261Q6UWH6 196 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 GSG1LQ6UXU4 331 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 STX12Q86Y82 276 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 PDXPQ96GD0 296 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 INPP5EQ9NRR6 644 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 C1GALT1Q9NS00 363 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 SDHAF2Q9NX18 166 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 CLEC1BQ9P126 229 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 ENTPD2Q9Y5L3 495 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 U3KQ87 197 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 COL4A6Q14031 1691 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 PER3P56645 1201 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 ENTPD8Q5MY95 495 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 TCTN3Q6NUS6 607 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 KIAA1211LQ6NV74 962 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 GPR155Q7Z3F1 870 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 VRK2Q86Y07 508 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 LRRC25Q8N386 305 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 ZSCAN1Q8NBB4 408 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 RADILQ96JH8 1075 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 QRSL1Q9H0R6 528 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 NARFLQ9H6Q4 476 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 ASF1BQ9NVP2 202 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 NYNRINQ9P2P1 1898 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 LTBP2Q14767 1821 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 C2orf74A8MZ97 194 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 B4DGG1 531 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 PPP3CBP16298 524 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 PRSS3P35030 304 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 CCR5P51681 352 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 FXYD6P3P58550 94 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 TIAL1Q01085 375 aaKnown RBP eCLIP10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 ABHD4Q8TB40 342 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 DOK4Q8TEW6 326 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 TMEM239Q8WW34 195 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 S1PR5Q9H228 398 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 SYT4Q9H2B2 425 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 MED20Q9H944 212 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 A4GALTQ9NPC4 353 aa10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 ACSS1Q9NUB1 689 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-201ENST00000266546 KIR2DS5A0A0G2JLQ3 304 aa10.71□□□□□ -0.69
CLSTN3-201ENST00000266546 A0A0G2JNG1 304 aa10.71□□□□□ -0.69
CLSTN3-201ENST00000266546 EPOPA6NHQ4 379 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms