RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ARL14Q8N4G2 192 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 SDR9C7Q8NEX9 313 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 HSD17B8Q92506 261 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 RSC1A1Q92681 617 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 YIPF5Q969M3 257 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 SMIM19Q96E16 107 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 CITED4Q96RK1 184 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 CNN2Q99439 309 aaKnown RBP17.25■□□□□ 0.35
CPSF3-201ENST00000238112 IGFLR1Q9H665 355 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 A6NCN8 305 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 GRXCR1A8MXD5 290 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 OR10H2O60403 315 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 TSC22D2O75157 780 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 NKX2-2O95096 273 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 NGFRP08138 427 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 HOXB2P14652 356 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 ATF1P18846 271 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 EMDP50402 254 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 SIAH3Q8IW03 269 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 CA13Q8N1Q1 262 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 OR4K13Q8NH42 304 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 ASB12Q8WXK4 309 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 ZNF426Q9BUY5 554 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 GHITMQ9H3K2 345 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 MRPL39Q9NYK5 338 aaKnown RBP17.25■□□□□ 0.35
CPSF3-201ENST00000238112 COPZ2Q9P299 210 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 SCN2AQ99250 2005 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 A0A0B4J203 849 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 TEX13CA0A0J9YWL9 993 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 LRRN3E7EW58 273 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 APBB3O95704 486 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 OR2T7P0C7T2 308 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 EPXP11678 715 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 GIFP27352 417 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 CDK5R1Q15078 307 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 PARM1Q6UWI2 310 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 POMGNT2Q8NAT1 580 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 OR2T27Q8NH04 317 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 SNX33Q8WV41 574 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 CTHRC1Q96CG8 243 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 GABRG3Q99928 467 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 MTIF3Q9H2K0 278 aaKnown RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 LRRN3Q9H3W5 708 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 EMC7Q9NPA0 242 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 SERTAD3Q9UJW9 196 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 C2orf74A8MZ97 194 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 MAGEB4O15481 346 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 OGG1O15527 345 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 GALR3O60755 368 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 CBX7O95931 251 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 TFP02787 698 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 HIST1H1CP16403 213 aaKnown RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 COL9A1P20849 921 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 NAA10P41227 235 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 DGCR2P98153 550 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 ZNHIT3Q15649 155 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 SYT9Q86SS6 491 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 GRAMD2AQ8IUY3 354 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 SYS1Q8N2H4 156 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 CSNK1A1LQ8N752 337 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 OR51L1Q8NGJ5 315 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 BAHD1Q8TBE0 780 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 ZNF431Q8TF32 576 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 FGF14Q92915 247 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 PELI1Q96FA3 418 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 SIPA1Q96FS4 1042 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 OR2M2Q96R28 347 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 OR51J1Q9H342 316 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 RANBP3Q9H6Z4 567 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 FBRSQ9HAH7 460 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 DZANK1Q9NVP4 752 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 DNAJB12Q9NXW2 375 aaKnown RBP17.24■□□□□ 0.35
CPSF3-201ENST00000238112 RPS6KB2Q9UBS0 482 aa17.24■□□□□ 0.35
CPSF3-201ENST00000238112 NDUFB2O95178 105 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 IFI6P09912 130 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 ANXA3P12429 323 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 ACAA2P42765 397 aaKnown RBP17.23■□□□□ 0.35
CPSF3-201ENST00000238112 SIRPAP78324 504 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 C19orf57Q0VDD7 668 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 CD276Q5ZPR3 534 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 BAIAP2L2Q6UXY1 529 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 UBE2Q1Q7Z7E8 422 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 LUZP2Q86TE4 346 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 OR11H7Q8NGC8 314 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 OR4D9Q8NGE8 314 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 ZNF671Q8TAW3 534 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 LRFN5Q96NI6 719 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 RPP25Q9BUL9 199 aaKnown RBP17.23■□□□□ 0.35
CPSF3-201ENST00000238112 CACNG6Q9BXT2 260 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 GSDMCQ9BYG8 508 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 TWSG1Q9GZX9 223 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 SLC23A1Q9UHI7 598 aa17.23■□□□□ 0.35
CPSF3-201ENST00000238112 GNB5O14775 395 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 ADAM11O75078 769 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 LSSP48449 732 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 FHL1Q13642 323 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 MANEAQ5SRI9 462 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 ZNF782Q6ZMW2 699 aaPredicted RBP17.22■□□□□ 0.35
CPSF3-201ENST00000238112 SLC35F2Q8IXU6 374 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms