RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 GPALPP1Q8IXQ4 340 aa12.95□□□□□ -0.34
USH1C-201ENST00000005226 CDK20Q8IZL9 346 aa12.95□□□□□ -0.34
USH1C-201ENST00000005226 OR11G2Q8NGC1 345 aa12.95□□□□□ -0.34
USH1C-201ENST00000005226 OR52I2Q8NH67 350 aa12.95□□□□□ -0.34
USH1C-201ENST00000005226 ZNF436Q9C0F3 470 aaPredicted RBP12.95□□□□□ -0.34
USH1C-201ENST00000005226 KRCC1Q9NPI7 259 aaPredicted RBP12.95□□□□□ -0.34
USH1C-201ENST00000005226 POT1Q9NUX5 634 aa12.95□□□□□ -0.34
USH1C-201ENST00000005226 MRPL39Q9NYK5 338 aaKnown RBP12.95□□□□□ -0.34
USH1C-201ENST00000005226 GNG8Q9UK08 70 aa12.95□□□□□ -0.34
USH1C-201ENST00000005226 ZNF346Q9UL40 294 aaKnown RBP12.95□□□□□ -0.34
USH1C-201ENST00000005226 SLC35A3Q9Y2D2 325 aa12.95□□□□□ -0.34
USH1C-201ENST00000005226 MRPS2Q9Y399 296 aaKnown RBP12.95□□□□□ -0.34
USH1C-201ENST00000005226 MED31Q9Y3C7 131 aa12.95□□□□□ -0.34
USH1C-201ENST00000005226 KNL1Q8NG31 2342 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 TBC1D3KA0A087X1G2 549 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 TBC1D3FA6NER0 549 aaPredicted RBP12.94□□□□□ -0.34
USH1C-201ENST00000005226 SERPINI2O75830 405 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 ALDOBP05062 364 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 ATXN8OSP0DMR3 200 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 POU3F2P20265 443 aaPredicted RBP12.94□□□□□ -0.34
USH1C-201ENST00000005226 TSPAN5P62079 268 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 RPS11P62280 158 aaKnown RBP eCLIP12.94□□□□□ -0.34
USH1C-201ENST00000005226 AMZ1Q400G9 498 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 AGBL4Q5VU57 503 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 TBC1D3GQ6DHY5 549 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 RD3Q7Z3Z2 195 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 HDDC3Q8N4P3 179 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 FAM98AQ8NCA5 519 aaKnown RBP12.94□□□□□ -0.34
USH1C-201ENST00000005226 ERMAPQ96PL5 475 aaPredicted RBP12.94□□□□□ -0.34
USH1C-201ENST00000005226 SYNDIG1Q9H7V2 258 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 UBQLN2Q9UHD9 624 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 SPATA2Q9UM82 520 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 ALPK2Q86TB3 2170 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 REV3LO60673 3130 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 TRBV2A0A0J9YWF9 115 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 C4orf47A7E2U8 309 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 CDK2AP1O14519 115 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 ARPC1BO15143 372 aaKnown RBP12.94□□□□□ -0.34
USH1C-201ENST00000005226 FCER2P06734 321 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 NT5EP21589 574 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 CMPK1P30085 196 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 RPS15P62841 145 aaKnown RBP12.94□□□□□ -0.34
USH1C-201ENST00000005226 SRSF5Q13243 272 aaKnown RBP12.94□□□□□ -0.34
USH1C-201ENST00000005226 CDH24Q86UP0 819 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 OR2L13Q8N349 312 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 COX18Q8N8Q8 333 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 TMEM52Q8NDY8 209 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 TRIM43Q96BQ3 446 aaPredicted RBP12.94□□□□□ -0.34
USH1C-201ENST00000005226 GFI1Q99684 422 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 HDAC8Q9BY41 377 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 SLC6A17Q9H1V8 727 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 HRASLSQ9HDD0 168 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 CA10Q9NS85 328 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 FLRT3Q9NZU0 649 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 RPS6KB2Q9UBS0 482 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 CAMK2AQ9UQM7 478 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 ADAM18Q9Y3Q7 739 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 NPFFR2Q9Y5X5 522 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 AUP1Q9Y679 476 aa12.94□□□□□ -0.34
USH1C-201ENST00000005226 PTP4A3O75365 173 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 FGF19O95750 216 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 UBL4AP11441 157 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 HIST1H1CP16403 213 aaKnown RBP12.93□□□□□ -0.34
USH1C-201ENST00000005226 M6PRP20645 277 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 EDNRAP25101 427 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 AK4P27144 223 aaPredicted RBP12.93□□□□□ -0.34
USH1C-201ENST00000005226 GABRA3P34903 492 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 CCR9P51686 369 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 MFSD13AQ14CX5 517 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 FAM78AQ5JUQ0 283 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 SLC25A25Q6KCM7 469 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 FBXO42Q6P3S6 717 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 FCRLAQ7L513 359 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 ZNF619Q8N2I2 560 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 GALNT11Q8NCW6 608 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 OR5T3Q8NGG3 340 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 SMARCD2Q92925 531 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 HGDQ93099 445 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 C1QTNF7Q9BXJ2 289 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 NOX4Q9NPH5 578 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 ANKRD10Q9NXR5 420 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 SCP2D1Q9UJQ7 156 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 COPS3Q9UNS2 423 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 POM121CA8CG34 1229 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 PIN1P1O15428 100 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 IFNA7P01567 189 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 LCN1P31025 176 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 CTNNB1P35222 781 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 ARFIP1P53367 373 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 PITPNAQ00169 270 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 ZNF425Q6IV72 752 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 PSRC1Q6PGN9 363 aaPredicted RBP12.93□□□□□ -0.34
USH1C-201ENST00000005226 UBE2Q1Q7Z7E8 422 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 SRFBP1Q8NEF9 429 aaKnown RBP12.93□□□□□ -0.34
USH1C-201ENST00000005226 OR56B4Q8NH76 319 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 SNX33Q8WV41 574 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 LCN9Q8WX39 176 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 ZNF707Q96C28 371 aaPredicted RBP12.93□□□□□ -0.34
USH1C-201ENST00000005226 MCCC2Q9HCC0 563 aa12.93□□□□□ -0.34
USH1C-201ENST00000005226 RDH8Q9NYR8 311 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms