RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 GTF2IRD2Q86UP8 949 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 COMTD1Q86VU5 262 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 HIPK1Q86Z02 1210 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 SULF2Q8IWU5 870 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 FAM86B1Q8N7N1 296 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 TMEM178AQ8NBL3 297 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 VANGL1Q8TAA9 524 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-208ENST00000634934 FAM173AQ9BQD7 235 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 ADNPQ9H2P0 1102 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 DEPPQ9NTK1 212 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 FAIMQ9NVQ4 179 aa13.17□□□□□ -0.3
LINC00339-208ENST00000634934 DNAJB12Q9NXW2 375 aaKnown RBP13.17□□□□□ -0.3
LINC00339-208ENST00000634934 CFAP46Q8IYW2 2715 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 G3V2T6 193 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 KLRC4-KLRK1H3BQV0 150 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 M0R3H8 397 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 SYT5O00445 386 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 ADAM10O14672 748 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 EPPINO95925 133 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 LGI1O95970 557 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 GKN3PP0CG01 181 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 IFI44LQ53G44 452 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 SOWAHCQ53LP3 525 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-208ENST00000634934 CBLN3Q6UW01 205 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 RBMXL3Q8N7X1 1067 aaKnown RBP13.16□□□□□ -0.3
LINC00339-208ENST00000634934 OR2M7Q8NG81 312 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 OR4K17Q8NGC6 315 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 ARSGQ96EG1 525 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 SCMH1Q96GD3 660 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 PYURFQ96I23 114 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 SEPHS2Q99611 448 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 LAT2Q9GZY6 243 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 FAM118AQ9NWS6 357 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 MED11Q9P086 117 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 TUBD1Q9UJT1 453 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 SLC9A8Q9Y2E8 581 aa13.16□□□□□ -0.3
LINC00339-208ENST00000634934 PINLYPA6NC86 204 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 EIF4E2O60573 245 aaKnown RBP13.15□□□□□ -0.3
LINC00339-208ENST00000634934 TRIM3O75382 744 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-208ENST00000634934 NUDT14O95848 222 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 CCNA2P20248 432 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 OR1E2P47887 323 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 MEOX1P50221 254 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 RAD23AP54725 363 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 RGS8P57771 180 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-208ENST00000634934 HOXC5Q00444 222 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 PLAURQ03405 335 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 SKP2Q13309 424 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 ZNF169Q14929 603 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-208ENST00000634934 XAF1Q6GPH4 301 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 TBPL2Q6SJ96 375 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-208ENST00000634934 PLCZ1Q86YW0 608 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 ZNF555Q8NEP9 628 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 OR1J4Q8NGS1 313 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 TBC1D15Q8TC07 691 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 SLC47A1Q96FL8 570 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 TMEM41AQ96HV5 264 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 MUS81Q96NY9 551 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 ARHGDIGQ99819 225 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 WFDC6Q9BQY6 131 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 DSN1Q9H410 356 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 HHATLQ9HCP6 504 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 TBC1D23Q9NUY8 699 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 BOKQ9UMX3 212 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-208ENST00000634934 HRH3Q9Y5N1 445 aa13.15□□□□□ -0.3
LINC00339-208ENST00000634934 TLN1Q9Y490 2541 aaKnown RBP13.15□□□□□ -0.3
LINC00339-208ENST00000634934 SNPHO15079 494 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 ATE1O95260 518 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 PRG2P13727 222 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 RFC3P40938 356 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 PLGLB1Q02325 96 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 NFATC3Q12968 1075 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 C6orf141Q5SZD1 244 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 TIGD3Q6B0B8 471 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 Q6ZS92 163 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 ZNF550Q7Z398 422 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 RBM45Q8IUH3 476 aaKnown RBP13.14□□□□□ -0.31
LINC00339-208ENST00000634934 GRAMD2AQ8IUY3 354 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 LACC1Q8IV20 430 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 ZNF440Q8IYI8 595 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 WDSUB1Q8N9V3 476 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 SETD9Q8NE22 299 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 FAM71CQ8NEG0 241 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 TOR1AIP2Q8NFQ8 470 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 TRUB1Q8WWH5 349 aaKnown RBP13.14□□□□□ -0.31
LINC00339-208ENST00000634934 GEMIN6Q8WXD5 167 aaKnown RBP13.14□□□□□ -0.31
LINC00339-208ENST00000634934 SLC39A7Q92504 469 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 FAM210AQ96ND0 272 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 FRMD6Q96NE9 622 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 GNRHR2Q96P88 292 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 ZFP64Q9NPA5 681 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 EXOSC3Q9NQT5 275 aaKnown RBP13.14□□□□□ -0.31
LINC00339-208ENST00000634934 FBXL2Q9UKC9 423 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 NINQ8N4C6 2090 aa13.14□□□□□ -0.31
LINC00339-208ENST00000634934 CDC40O60508 579 aaKnown RBP eCLIP13.13□□□□□ -0.31
LINC00339-208ENST00000634934 IFNW1P05000 195 aa13.13□□□□□ -0.31
LINC00339-208ENST00000634934 ELAVL4P26378 380 aaKnown RBP13.13□□□□□ -0.31
LINC00339-208ENST00000634934 MSX1P28360 303 aa13.13□□□□□ -0.31
LINC00339-208ENST00000634934 P2RX1P51575 399 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms