RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PNMTP11086 282 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 IFI30P13284 250 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 FUT1P19526 365 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 TACR3P29371 465 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 SUMO3P55854 103 aaPredicted RBP12.97□□□□□ -0.33
USP39-220ENST00000613444 DLX5P56178 289 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 MEP1AQ16819 746 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 TTC33Q6PID6 262 aaPredicted RBP12.97□□□□□ -0.33
USP39-220ENST00000613444 MDGA2Q7Z553 956 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 BEST3Q8N1M1 668 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 WDSUB1Q8N9V3 476 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 OR8D4Q8NGM9 314 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 NXPE2Q96DL1 559 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 BPIFA2Q96DR5 249 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 FER1L6-AS2Q96M78 137 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 ANGPTL4Q9BY76 406 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 DPH1Q9BZG8 443 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 EGLN3Q9H6Z9 239 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 HPF1Q9NWY4 346 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 SELENONQ9NZV5 590 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 OSGIN1Q9UJX0 560 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 HSPE1-MOB4S4R3N1 261 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 FREM3P0C091 2139 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 SPTBN4Q9H254 2564 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 MAGEA13PA6NCF6 341 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 ETV2O00321 342 aaPredicted RBP12.97□□□□□ -0.33
USP39-220ENST00000613444 ELK4P28324 431 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 FXYD6P3P58550 94 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 EGR4Q05215 589 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 PRAMEF20Q5VT98 475 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 SLC30A6Q6NXT4 461 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 ENTHD1Q8IYW4 607 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 FADS6Q8N9I5 356 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 SGCZQ96LD1 299 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 NPAS1Q99742 590 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 TMEM43Q9BTV4 400 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 LHPPQ9H008 270 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 ZNF696Q9H7X3 374 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 TAS2R10Q9NYW0 307 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 IL20Q9NYY1 176 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 PPP4R1LQ9P1A2 415 aa12.97□□□□□ -0.33
USP39-220ENST00000613444 TRIM64A6NGJ6 449 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 NKX2-8O15522 239 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 CDC40O60508 579 aaKnown RBP eCLIP12.96□□□□□ -0.33
USP39-220ENST00000613444 NUDT14O95848 222 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 SDHBP21912 280 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 POU1F1P28069 291 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 MSX1P28360 303 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 CDK5Q00535 292 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 FHL1Q13642 323 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 SLX4IPQ5VYV7 408 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 SLC22A10Q63ZE4 541 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 ARSKQ6UWY0 536 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 ZNF620Q6ZNG0 422 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 SETD9Q8NE22 299 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 OR2M3Q8NG83 312 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 APOL4Q9BPW4 351 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 SLC19A3Q9BZV2 496 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 KRCC1Q9NPI7 259 aaPredicted RBP12.96□□□□□ -0.33
USP39-220ENST00000613444 SDHAF3Q9NRP4 125 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 ANKRD10Q9NXR5 420 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 AASSQ9UDR5 926 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 TMEM5Q9Y2B1 443 aa12.96□□□□□ -0.33
USP39-220ENST00000613444 NCKAP5O14513 1909 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 ANKRD33BA6NCL7 494 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 ELOA3DA6NLF2 546 aaPredicted RBP12.96□□□□□ -0.34
USP39-220ENST00000613444 ENO4A6NNW6 628 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 H3BN98 237 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 LAMA5O15230 3695 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 IGF2P01344 180 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 GP1BBP13224 206 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 PRKCAP17252 672 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 GABRB1P18505 474 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 HLCSP50747 726 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 CRYZQ08257 329 aaKnown RBP12.96□□□□□ -0.34
USP39-220ENST00000613444 FOXC1Q12948 553 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 CDK5R2Q13319 367 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 MAD2L1BPQ15013 274 aaPredicted RBP12.96□□□□□ -0.34
USP39-220ENST00000613444 ELOA3BQ3SY89 546 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 C12orf73Q69YU5 71 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 RTL4Q6ZR62 310 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 CLDN22Q8N7P3 220 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 ELOA3Q8NG57 546 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 CNIH3Q8TBE1 160 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 APH1BQ8WW43 257 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 ZNF226Q9NYT6 803 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 STMN3Q9NZ72 180 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 FBXL2Q9UKC9 423 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 RNF6Q9Y252 685 aa12.96□□□□□ -0.34
USP39-220ENST00000613444 FRYQ5TBA9 3013 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 UNC119BA6NIH7 251 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 PTP4A3O75365 173 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 TNFAIP8O95379 198 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 SPINK2P20155 84 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 ITGA3P26006 1051 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 GIPRP48546 466 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 SOX8P57073 446 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 NUP107P57740 925 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 IL5RAQ01344 420 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 ACSM5Q6NUN0 579 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms