RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LSM14AQ8ND56 463 aaKnown RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 OR2T29Q8NH02 315 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 OR14L1PQ8NHC6 308 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 SLC38A4Q969I6 547 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 MPP4Q96JB8 637 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 UBL7Q96S82 380 aaPredicted RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 NPAS1Q99742 590 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 PIGQQ9BRB3 760 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 ANKRD19PQ9H560 264 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 LUZP4Q9P127 313 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 OSGIN1Q9UJX0 560 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 RPH3AQ9Y2J0 694 aaPredicted RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 RRP15Q9Y3B9 282 aaKnown RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 A0A087WUJ7 227 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 A0A1W2PRQ8 180 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 OR2M5A3KFT3 312 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 LINC01387J3KSC0 135 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 CLOCKO15516 846 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 DEAF1O75398 565 aaPredicted RBP12.98□□□□□ -0.33
UPF1-211ENST00000600868 IGHG3P01860 377 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 CELA3AP09093 270 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 CHMP24386 653 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 CXCR1P25024 350 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 FASP25445 335 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 ELK4P28324 431 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 HMGA2P52926 109 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 FOXK1P85037 733 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 DGCR6Q14129 220 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 GK3PQ14409 553 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 TRAM2Q15035 370 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 ATP6AP1Q15904 470 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 CMPK2Q5EBM0 449 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 COLEC12Q5KU26 742 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 WIPI1Q5MNZ9 446 aaPredicted RBP12.98□□□□□ -0.33
UPF1-211ENST00000600868 RAET1LQ5VY80 246 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 FAM180AQ6UWF9 173 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 LINC00114Q6XXX2 140 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 ADGRG3Q86Y34 549 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 PRSS27Q9BQR3 290 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 AGPAT4Q9NRZ5 378 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 MAN2C1Q9NTJ4 1040 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 RHCGQ9UBD6 479 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 DNAJB9Q9UBS3 223 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 SLC7A7Q9UM01 511 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 TESMINQ9Y4I5 508 aa12.98□□□□□ -0.33
UPF1-211ENST00000600868 TLN1Q9Y490 2541 aaKnown RBP12.98□□□□□ -0.33
UPF1-211ENST00000600868 TMED7-TICAM2A0A0A6YYA0 188 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 ELOA3DA6NLF2 546 aaPredicted RBP12.97□□□□□ -0.33
UPF1-211ENST00000600868 SHISA8B8ZZ34 492 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 ATXN7O15265 892 aaPredicted RBP12.97□□□□□ -0.33
UPF1-211ENST00000600868 SUSD5O60279 629 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 HCN1O60741 890 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 WISP1O95388 367 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 LDLRP01130 860 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 TCEA1P23193 301 aaKnown RBP12.97□□□□□ -0.33
UPF1-211ENST00000600868 FKBP2P26885 142 aaKnown RBP12.97□□□□□ -0.33
UPF1-211ENST00000600868 RRM2P31350 389 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 GFRA1P56159 465 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 SPIBQ01892 262 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.97□□□□□ -0.33
UPF1-211ENST00000600868 ELOA3BQ3SY89 546 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 ZNF324BQ6AW86 544 aaPredicted RBP12.97□□□□□ -0.33
UPF1-211ENST00000600868 TRILQ7L0X0 811 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 ELOA3Q8NG57 546 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 OR5M1Q8NGP8 315 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 NEIL3Q8TAT5 605 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 LRTOMTQ8WZ04 291 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 HS6ST2Q96MM7 605 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 SFXN2Q96NB2 322 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 ZNF426Q9BUY5 554 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 DEFB127Q9H1M4 99 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 REEP1Q9H902 201 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 SERINC1Q9NRX5 453 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 CHRNA9Q9UGM1 479 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 TMED7Q9Y3B3 224 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 NBEAQ8NFP9 2946 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 FREM3P0C091 2139 aa12.97□□□□□ -0.33
UPF1-211ENST00000600868 TRGV5A0A0B4J1U4 118 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 A0A1B0GVC2 190 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 TMEM72A0PK05 275 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 GNGT2O14610 69 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 ZNF208O43345 1280 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 EFNA2O43921 213 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 GADD45GO95257 159 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 FUT4P22083 530 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 GCKP35557 465 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 RBM34P42696 430 aaKnown RBP12.96□□□□□ -0.33
UPF1-211ENST00000600868 LIMS1P48059 325 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 RAC1P63000 192 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 SELENBP1Q13228 472 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 NHSL2Q5HYW2 709 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 WDR88Q6ZMY6 472 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 NKAIN4Q8IVV8 208 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 LILRA2Q8N149 483 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 CISD2Q8N5K1 135 aaKnown RBP12.96□□□□□ -0.33
UPF1-211ENST00000600868 RNF217Q8TC41 542 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 SLC25A43Q8WUT9 341 aaPredicted RBP12.96□□□□□ -0.33
UPF1-211ENST00000600868 CENPNQ96H22 339 aaPredicted RBP12.96□□□□□ -0.33
UPF1-211ENST00000600868 EPYCQ99645 322 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 BARD1Q99728 777 aaKnown RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms