RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NTN4Q9HB63 628 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 CACYBPQ9HB71 228 aaKnown RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 EXOSC3Q9NQT5 275 aaKnown RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 DEPPQ9NTK1 212 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 KLHL28Q9NXS3 571 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 KLRF1Q9NZS2 232 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 CNIH4Q9P003 139 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 MED11Q9P086 117 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 ABI3Q9P2A4 366 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 SLC13A4Q9UKG4 626 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 ACAD8Q9UKU7 415 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 ICAM5Q9UMF0 924 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 A4GNTQ9UNA3 340 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 SLC9A8Q9Y2E8 581 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 CSAG2Q9Y5P2 127 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 ENPP4Q9Y6X5 453 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 EXPH5Q8NEV8 1989 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 PINLYPA6NC86 204 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 OR5H15A6NDH6 313 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 H0Y3Z8 333 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 CLOCKO15516 846 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 HCRTR2O43614 444 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 SLC25A12O75746 678 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 CYP7B1O75881 506 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 LYPD3O95274 346 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 P04436 131 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 ANPEPP15144 967 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 HOXB6P17509 224 aaKnown RBP8.56□□□□□ -1.04
TRIM28-208ENST00000597172 RHCEP18577 417 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 RYKP34925 604 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 DNASE1L1P49184 302 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 RGS8P57771 180 aaPredicted RBP8.56□□□□□ -1.04
TRIM28-208ENST00000597172 RPP38P78345 283 aaKnown RBP8.56□□□□□ -1.04
TRIM28-208ENST00000597172 EPS8Q12929 822 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 PIN1Q13526 163 aaPredicted RBP8.56□□□□□ -1.04
TRIM28-208ENST00000597172 RCN1Q15293 331 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 TOMM34Q15785 309 aaPredicted RBP8.56□□□□□ -1.04
TRIM28-208ENST00000597172 ENTPD8Q5MY95 495 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 SLC25A25Q6KCM7 469 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 MTFR2Q6P444 385 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 IGFL3Q6UXB1 125 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 DEF8Q6ZN54 512 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF550Q7Z398 422 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 LSRQ86X29 649 aaPredicted RBP8.56□□□□□ -1.04
TRIM28-208ENST00000597172 FADS6Q8N9I5 356 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 OR5W2Q8NH69 310 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 B4GALNT2Q8NHY0 566 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 FAR1Q8WVX9 515 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 STMN2Q93045 179 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 SH3YL1Q96HL8 342 aaPredicted RBP8.56□□□□□ -1.04
TRIM28-208ENST00000597172 DSN1Q9H410 356 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 DCLRE1BQ9H816 532 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 TIMMDC1Q9NPL8 285 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 CTPS2Q9NRF8 586 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 SACM1LQ9NTJ5 587 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 VNN3Q9NY84 501 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 RHCGQ9UBD6 479 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 WIF1Q9Y5W5 379 aa8.56□□□□□ -1.04
TRIM28-208ENST00000597172 CPAMD8Q8IZJ3 1885 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 FAAHO00519 579 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 GNB5O14775 395 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 SNPHO15079 494 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 GMFGO60234 142 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 FMO6PO60774 539 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 SNX4O95219 450 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 NTN1O95631 604 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ATP6V1G2O95670 118 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 BAG2O95816 211 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 CST1P01037 141 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 SP1P08047 785 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 LINGO3P0C6S8 592 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ITGA2P17301 1181 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 FASP25445 335 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 MST1P26927 711 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 MSX1P28360 303 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 IDH2P48735 452 aaKnown RBP8.55□□□□□ -1.04
TRIM28-208ENST00000597172 TNFSF10P50591 281 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 P2RX1P51575 399 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 HMGA2P52926 109 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 GPR85P60893 370 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ARG2P78540 354 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 FOXO1Q12778 655 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 PPP1R8Q12972 351 aaKnown RBP8.55□□□□□ -1.04
TRIM28-208ENST00000597172 OR1Q1Q15612 314 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ATP6AP1Q15904 470 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 FBXW10Q5XX13 1052 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 TIGD3Q6B0B8 471 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 OR2T5Q6IEZ7 315 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 CLEC9AQ6UXN8 241 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 Q6ZS92 163 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 TMEM179BQ7Z7N9 219 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 PLCZ1Q86YW0 608 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 SULF2Q8IWU5 870 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF440Q8IYI8 595 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 PQLC1Q8N2U9 271 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ZADH2Q8N4Q0 377 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 LSMEM1Q8N8F7 131 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 PIK3C3Q8NEB9 887 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 OR2M3Q8NG83 312 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 OR2T29Q8NH02 315 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms