RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	ASB15	Q8WXK1	588 aa		14.2	□□□□□ -0.14
DDX39A-209	ENST00000589318	RACGAP1	Q9H0H5	632 aa		14.2	□□□□□ -0.14
DDX39A-209	ENST00000589318	RNF121	Q9H920	327 aa		14.2	□□□□□ -0.14
DDX39A-209	ENST00000589318	SMURF1	Q9HCE7	757 aa		14.2	□□□□□ -0.14
DDX39A-209	ENST00000589318	GLTP	Q9NZD2	209 aa		14.2	□□□□□ -0.14
DDX39A-209	ENST00000589318	AP3D1	O14617	1153 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	GALR2	O43603	387 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	WBP4	O75554	376 aa	Known RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	LDOC1	O95751	146 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	DDAH2	O95865	285 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	PDGFA	P04085	211 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	NID1	P14543	1247 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	TNNI3	P19429	210 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	TNFSF8	P32971	234 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	TRHR	P34981	398 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	FOXD4	Q12950	439 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	NPRL3	Q12980	569 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	ZNHIT3	Q15649	155 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	TOR2A	Q5JU69	321 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	C19orf48	Q6RUI8	117 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	PRSS58	Q8IYP2	241 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	TAGAP	Q8N103	731 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	BMPER	Q8N8U9	685 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	DIO2	Q92813	273 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	PMM1	Q92871	262 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	KIAA1143	Q96AT1	154 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	NEDD4L	Q96PU5	975 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	C14orf119	Q9NWQ9	140 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	NUFIP1	Q9UHK0	495 aa	Known RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	KIF26B	Q2KJY2	2108 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	LOC100506127	A0A0U1RQW1	187 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	CLCA1	A8K7I4	914 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318		A8MUA0	341 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318		A8MV72	311 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	GAST	P01350	101 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	DBI	P07108	87 aa	Known RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	GP1BA	P07359	652 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	PSKH1	P11801	424 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	ZNF136	P52737	540 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	HOXC5	Q00444	222 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	TRA2A	Q13595	282 aa	Known RBP eCLIP	14.19	□□□□□ -0.14	1e-6	■□□□□ 10.9
DDX39A-209	ENST00000589318	LARS2	Q15031	903 aa	Known RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	QPRT	Q15274	297 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	ELAVL1	Q15717	326 aa	Known RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	NKAIN1	Q4KMZ8	207 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	TMPRSS11A	Q6ZMR5	421 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	CCDC71	Q8IV32	467 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	GDPD1	Q8N9F7	314 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	AQP11	Q8NBQ7	271 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	PLPP5	Q8NEB5	264 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	STT3B	Q8TCJ2	826 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	ZNF721	Q8TF20	911 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	HRASLS5	Q96KN8	279 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	FYTTD1	Q96QD9	318 aa	Known RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	SLC7A5P2	Q9GIP4	190 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	TRIM45	Q9H8W5	580 aa	Predicted RBP	14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	CTPS2	Q9NRF8	586 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	ERVK13-1	Q9NX77	482 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	FTSJ1	Q9UET6	329 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	MKL2	Q9ULH7	1088 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	POFUT2	Q9Y2G5	429 aa		14.19	□□□□□ -0.14
DDX39A-209	ENST00000589318	CACNA1H	O95180	2353 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	EFCAB10	A6NFE3	127 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	CDX4	O14627	284 aa	Predicted RBP	14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	FLRT2	O43155	660 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	ONECUT2	O95948	504 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	FGF5	P12034	268 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	CSTF2	P33240	577 aa	Known RBP eCLIP	14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	SMIM11A	P58511	58 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	NSDHL	Q15738	373 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	NNAT	Q16517	81 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	DCST1	Q5T197	706 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	MRPL2	Q5T653	305 aa	Known RBP	14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	PPP1R3B	Q86XI6	285 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	SLC2A12	Q8TD20	617 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	14.18	□□□□□ -0.14	4e-7	■□□□□ 10.9
DDX39A-209	ENST00000589318	KLHL28	Q9NXS3	571 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	SLC13A4	Q9UKG4	626 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	POLH	Q9Y253	713 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	NTNG1	Q9Y2I2	539 aa		14.18	□□□□□ -0.14
DDX39A-209	ENST00000589318	CDHR4	A6H8M9	788 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	EFCAB7	A8K855	629 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	NPIPB9	F8W1W9	429 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	FAAH	O00519	579 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	THY1	P04216	161 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	UQCRC1	P31930	480 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	RGS8	P57771	180 aa	Predicted RBP	14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	LSM11	P83369	360 aa	Known RBP eCLIP	14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	FLYWCH1	Q4VC44	716 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	EIPR1	Q53HC9	387 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	PODNL1	Q6PEZ8	512 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	SHISA6	Q6ZSJ9	500 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	MORN4	Q8NDC4	146 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	RHBDD1	Q8TEB9	315 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	HYLS1	Q96M11	299 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	FNDC11	Q9BVV2	318 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	UCK2	Q9BZX2	261 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	SRR	Q9GZT4	340 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318		Q9N2J8	555 aa		14.17	□□□□□ -0.14
DDX39A-209	ENST00000589318	SEMA4G	Q9NTN9	838 aa		14.17	□□□□□ -0.14

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms