RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	PAPOLG	Q9BWT3	736 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ATP13A3	Q9H7F0	1226 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	IL1RL2	Q9HB29	575 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	NUP50	Q9UKX7	468 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	GRID1	Q9ULK0	1009 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	NALCN	Q8IZF0	1738 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ADGRA3	Q8IWK6	1321 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	N4BP2	Q86UW6	1770 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	FAM240B	A0A1B0GVZ2	78 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595		A0A1W2PS18	150 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ESYT2	A0FGR8	921 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	OR5H15	A6NDH6	313 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	MYMK	A6NI61	221 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	PSMD11	O00231	422 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	CCRL2	O00421	344 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	CASK	O14936	926 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	CFLAR	O15519	480 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	NDUFA2	O43678	99 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	PRKN	O60260	465 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	TSPAN2	O60636	221 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	EDF1	O60869	148 aa	Known RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	DNAJB6	O75190	326 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	CTAG2	O75638	210 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	KRT33A	O76009	404 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	MYO1D	O94832	1006 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ANGPTL1	O95841	491 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	THRA	P10827	490 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	PNMT	P11086	282 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SLC2A2	P11168	524 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SLC2A3	P11169	496 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	AMD1	P17707	334 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	PSMA2	P25787	234 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	RPL9	P32969	192 aa	Known RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	BRCC3	P46736	316 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ETV1	P50549	477 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	PLA2G16	P53816	162 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SLC18A1	P54219	525 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	AQP4	P55087	323 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	FOXG1	P55316	489 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SEC61G	P60059	68 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ESRRG	P62508	458 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	CDKL1	Q00532	357 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	TGM3	Q08188	693 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SELENBP1	Q13228	472 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ZNF846	Q147U1	533 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	DNAL1	Q4LDG9	190 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	TECRL	Q5HYJ1	363 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	OGFRL1	Q5TC84	451 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	METTL11B	Q5VVY1	283 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	DUPD1	Q68J44	220 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	PNCK	Q6P2M8	343 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ZNF549	Q6P9A3	640 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SLC25A47	Q6Q0C1	308 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	KBTBD3	Q8NAB2	608 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	OR5AU1	Q8NGC0	362 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ZNF420	Q8TAQ5	688 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SLC22A8	Q8TCC7	542 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	LIPH	Q8WWY8	451 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ADIPOR1	Q96A54	375 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	CIDEC	Q96AQ7	238 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SCRN2	Q96FV2	425 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	COQ2	Q96H96	371 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	CAPNS2	Q96L46	248 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	FAM218A	Q96MZ4	157 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	AMDHD1	Q96NU7	426 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	RBM14	Q96PK6	669 aa	Known RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	RANBP9	Q96S59	729 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	RPP25	Q9BUL9	199 aa	Known RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	APOO	Q9BUR5	198 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	C1orf50	Q9BV19	199 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	TRIM15	Q9C019	465 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	GPN2	Q9H9Y4	310 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ZFP14	Q9HCL3	533 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	NRN1	Q9NPD7	142 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	UBE2T	Q9NPD8	197 aa	Predicted RBP	4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ZDHHC18	Q9NUE0	388 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SLC39A1	Q9NY26	324 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	TAS2R7	Q9NYW3	318 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	MBD2	Q9UBB5	411 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	SEC14L3	Q9UDX4	400 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	LGALS13	Q9UHV8	139 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	AP3M1	Q9Y2T2	418 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	WDR45	Q9Y484	360 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	AP4S1	Q9Y587	144 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ZHX2	Q9Y6X8	837 aa		4.22	□□□□□ -1.73
SS18-223	ENST00000583595	ATRN	O75882	1429 aa		4.21	□□□□□ -1.73
SS18-223	ENST00000583595	MYH1	P12882	1939 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	MYH2	Q9UKX2	1941 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595		A0A075B6Q4	140 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	PPIAL4C	A0A0B4J2A2	164 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	IGHV4-61	A0A0C4DH41	118 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595		A0A0D9SFI3	127 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	hCG_38984	A0A1B0GV85	526 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	SMCO2	A6NFE2	343 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	PCP4L1	A6NKN8	68 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	FAM74A7	A6NL05	159 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TCP10L2	B9ZVM9	353 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	PRAC2	D3DTV9	90 aa		4.21	□□□□□ -1.74

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