RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SNAP47Q5SQN1 464 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 MED25Q71SY5 747 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 OR4C6Q8NH72 309 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 HTRA1Q92743 480 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 ALG8Q9BVK2 526 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 HDHD5Q9BXW7 423 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 LRRN3Q9H3W5 708 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 ENAMQ9NRM1 1142 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 A0A087WUJ7 227 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 IGKV3D-11A0A0A0MRZ8 115 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 SLC35F4A4IF30 521 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 SLC22A31A6NKX4 558 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 TTC36A6NLP5 189 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 RIIAD1A6NNX1 92 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 NUDT21O43809 227 aaKnown RBP18.61■□□□□ 0.57
CLN3-230ENST00000568076 PEPDP12955 493 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 CD226Q15762 336 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 ZMAT1Q5H9K5 638 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 ARMC4Q5T2S8 1044 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 FNDC7Q5VTL7 733 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 LRRC17Q8N6Y2 441 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 GATSQ8NAP1 163 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 ATP6V1C2Q8NEY4 427 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 MIXL1Q9H2W2 232 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 C14orf119Q9NWQ9 140 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 TRAPPC4Q9Y296 219 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 CMAHPQ9Y471 501 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 MMACHCQ9Y4U1 282 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 SIRT4Q9Y6E7 314 aaPredicted RBP18.61■□□□□ 0.57
CLN3-230ENST00000568076 TRIOBPQ9H2D6 2365 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 BCAT2O15382 392 aaPredicted RBP18.61■□□□□ 0.57
CLN3-230ENST00000568076 MRPL3P09001 348 aaKnown RBP18.61■□□□□ 0.57
CLN3-230ENST00000568076 FOLR1P15328 257 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 SPNP16150 400 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 HK1P19367 917 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 SLC6A6P31641 620 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 GPR143P51810 404 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 CAV3P56539 151 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 RPS7P62081 194 aaKnown RBP18.61■□□□□ 0.57
CLN3-230ENST00000568076 DMWDQ09019 674 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 BIKQ13323 160 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 Q8N9G6 341 aaPredicted RBP18.61■□□□□ 0.57
CLN3-230ENST00000568076 FAM71CQ8NEG0 241 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 C3orf49Q96BT1 292 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 NXF5Q9H1B4 397 aaKnown RBP18.61■□□□□ 0.57
CLN3-230ENST00000568076 ABCB9Q9NP78 766 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 MKKSQ9NPJ1 570 aaPredicted RBP18.61■□□□□ 0.57
CLN3-230ENST00000568076 ICAM5Q9UMF0 924 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 BAIAP2Q9UQB8 552 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 GSTK1Q9Y2Q3 226 aa18.61■□□□□ 0.57
CLN3-230ENST00000568076 EML5Q05BV3 1969 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 SPEGQ15772 3267 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 TP53BP1Q12888 1972 aaPredicted RBP18.6■□□□□ 0.57
CLN3-230ENST00000568076 A0A1B0GVT2 93 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 SHISA3A0PJX4 238 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 K7ESF4 209 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 GABRPO00591 440 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 OIP5O43482 229 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 GYPBP06028 91 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 AFF3P51826 1226 aaKnown RBP18.6■□□□□ 0.57
CLN3-230ENST00000568076 SLC16A1P53985 500 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 CD300CQ08708 224 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 GALEQ14376 348 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 ZNF79Q15937 498 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 TMPRSS11AQ6ZMR5 421 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 TMEM151BQ8IW70 566 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 OR10H4Q8NGA5 316 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 OR5M3Q8NGP4 307 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 SMAP2Q8WU79 429 aaPredicted RBP18.6■□□□□ 0.57
CLN3-230ENST00000568076 DNAJA4Q8WW22 397 aaPredicted RBP18.6■□□□□ 0.57
CLN3-230ENST00000568076 SGTBQ96EQ0 304 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 ART5Q96L15 291 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 OR1F2PQ96R84 312 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 CCDC32Q9BV29 185 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 OR8D2Q9GZM6 311 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 ADGRL4Q9HBW9 690 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 CPNE5Q9HCH3 593 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 BABAM2Q9NXR7 383 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 CHRNA9Q9UGM1 479 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 MUTYHQ9UIF7 546 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 SERTAD3Q9UJW9 196 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 HEATR5AQ86XA9 2040 aa18.6■□□□□ 0.57
CLN3-230ENST00000568076 DAPL1A0PJW8 107 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 DVL2O14641 736 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 ZNF3P17036 446 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 ARL4DP49703 201 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 BDH1Q02338 343 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 APOOLQ6UXV4 268 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 TMEM91Q6ZNR0 172 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 D2HGDHQ8N465 521 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 CLDN23Q96B33 292 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 ERMAPQ96PL5 475 aaPredicted RBP18.59■□□□□ 0.57
CLN3-230ENST00000568076 ASB6Q9NWX5 421 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 VCANP13611 3396 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 A0A1W2PQL4 384 aaPredicted RBP18.59■□□□□ 0.57
CLN3-230ENST00000568076 A8MU76 341 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 MCIDASD6RGH6 385 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 SOX1O00570 391 aaPredicted RBP18.59■□□□□ 0.57
CLN3-230ENST00000568076 POLR1CO15160 346 aaPredicted RBP18.59■□□□□ 0.57
CLN3-230ENST00000568076 DUX1O43812 170 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms