RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	KLLN	B2CW77	178 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442		E7ESA3	106 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	ARPC3	O15145	178 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	RTL8C	O15255	209 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	ZNF264	O43296	627 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	MTX2	O75431	263 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	RHOBTB1	O94844	696 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	LALBA	P00709	142 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	PNMT	P11086	282 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	RNH1	P13489	461 aa	Known RBP	3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	MMP11	P24347	488 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	RBMX	P38159	391 aa	Known RBP	3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	HNMT	P50135	292 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	ARFIP1	P53367	373 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	RIPPLY3	P57055	190 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	LYZ	P61626	148 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	SPIB	Q01892	262 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	ZNF45	Q02386	682 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	EGFEM1P	Q0D2K5	195 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	SPATA46	Q5T0L3	261 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	SCARA5	Q6ZMJ2	495 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	CCDC80	Q76M96	950 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	PPP1R27	Q86WC6	154 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	TGIF2LY	Q8IUE0	185 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	PRR22	Q8IZ63	422 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	OR4D9	Q8NGE8	314 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	OR52M1	Q8NGK5	317 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	OR56B4	Q8NH76	319 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	TCTEX1D2	Q8WW35	142 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	PHYHIPL	Q96FC7	376 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	TECTB	Q96PL2	329 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	SLC35A5	Q9BS91	424 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	NICN1	Q9BSH3	213 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	SMPD3	Q9NY59	655 aa	Predicted RBP	3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	TBK1	Q9UHD2	729 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	PTBP2	Q9UKA9	531 aa	Known RBP	3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	RASD1	Q9Y272	281 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	CLSPN	Q9HAW4	1339 aa		3.15	□□□□□ -1.91
CHD9-215	ENST00000565442	TMEM110-MUSTN1	A8MSY1	372 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	GPR89A	B7ZAQ6	455 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	TAPBP	O15533	448 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	OR10H3	O60404	316 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	TIMP1	P01033	207 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	GPR89B	P0CG08	455 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	RBMY1C	P0DJD4	496 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	PCMT1	P22061	227 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	DAP3	P51398	398 aa	Known RBP	3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	BID	P55957	195 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	MAP2K1	Q02750	393 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	CHRNB3	Q05901	458 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	CCDC173	Q0VFZ6	552 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	ARC	Q7LC44	396 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	PPP1R42	Q7Z4L9	355 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	TMEM110	Q86TL2	294 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	VSTM4	Q8IW00	320 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	ZNF100	Q8IYN0	542 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	SVOPL	Q8N434	492 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	TMEM252	Q8N6L7	170 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	ALLC	Q8N6M5	410 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	CATSPER1	Q8NEC5	780 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	BBS1	Q8NFJ9	593 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	PIGC	Q92535	297 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	NUS1	Q96E22	293 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	ZIM3	Q96PE6	472 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	SMIM14	Q96QK8	99 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	PLEKHF1	Q96S99	279 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	TBX15	Q96SF7	602 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	GAL3ST1	Q99999	423 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	KLHDC3	Q9BQ90	382 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	SMYD3	Q9H7B4	428 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	MARCH5	Q9NX47	278 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	CD274	Q9NZQ7	290 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	PIPOX	Q9P0Z9	390 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	PHF11	Q9UIL8	331 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	ZNF256	Q9Y2P7	627 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	TTC21B	Q7Z4L5	1316 aa		3.14	□□□□□ -1.91
CHD9-215	ENST00000565442	C15orf38-AP3S2	A0A0A6YYH1	394 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442		A0A1B0GUS0	222 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	FAM231B	A6NCW3	169 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	CXCL13	O43927	109 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	ECI2	O75521	394 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	DNAH10OS	P0CZ25	163 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	ZNF44	P15621	663 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	IMPDH1	P20839	514 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	GLRA2	P23416	452 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	HMGB2	P26583	209 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	YWHAB	P31946	246 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	RDX	P35241	583 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	TDO2	P48775	406 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	PLK1	P53350	603 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	C1orf61	Q13536	156 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	MESD	Q14696	234 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	GANAB	Q14697	944 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	PMF1	Q6P1K2	205 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	WDR74	Q6RFH5	385 aa	Predicted RBP	3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	UNQ9370/PRO34162	Q6UXP9	181 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	SYT10	Q6XYQ8	523 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	ACOT7L	Q6ZUV0	252 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	FAM220A	Q7Z4H9	259 aa		3.13	□□□□□ -1.91
CHD9-215	ENST00000565442	SLC35F2	Q8IXU6	374 aa		3.13	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms