RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PGM1P36871 562 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 CSNK2A1P68400 391 aaPredicted RBP15.14■□□□□ 0.01
CLN3-216ENST00000565316 CLEC12BQ2HXU8 276 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 PGGHGQ32M88 737 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 SYT14P1Q58G82 188 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 TYW3Q6IPR3 259 aaKnown RBP15.14■□□□□ 0.01
CLN3-216ENST00000565316 EMBQ6PCB8 327 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 C16orf62Q7Z3J2 963 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 MTDHQ86UE4 582 aaKnown RBP15.14■□□□□ 0.01
CLN3-216ENST00000565316 P2RY8Q86VZ1 359 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 ZNF781Q8N8C0 355 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 KBTBD8Q8NFY9 601 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 OR4A15Q8NGL6 344 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 TESCQ96BS2 214 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 ZNF775Q96BV0 537 aaPredicted RBP15.14■□□□□ 0.01
CLN3-216ENST00000565316 CCDC106Q9BWC9 280 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 GRIP2Q9C0E4 1043 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 SLC35A3Q9Y2D2 325 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.14■□□□□ 0.01
CLN3-216ENST00000565316 STAB1Q9NY15 2570 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 SULT2B1O00204 365 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 ANKRD28O15084 1053 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 BIRC5O15392 142 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 BCAS1O75363 584 aaPredicted RBP15.13■□□□□ 0.01
CLN3-216ENST00000565316 CYP7B1O75881 506 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 CD8AP01732 235 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 SERPINE1P05121 402 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 FESP07332 822 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 OR12D1P0DN82 309 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 UQCRC2P22695 453 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 IGHV1-2P23083 117 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 APOBEC1P41238 236 aaKnown RBP15.13■□□□□ 0.01
CLN3-216ENST00000565316 PPA1Q15181 289 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 PDCD2Q16342 344 aaPredicted RBP15.13■□□□□ 0.01
CLN3-216ENST00000565316 TIMM23BQ5SRD1 257 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 ANXA8L1Q5VT79 327 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 SAXO2Q658L1 398 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 DNM1P46Q6ZS02 220 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 ZNF433Q8N7K0 673 aaPredicted RBP15.13■□□□□ 0.01
CLN3-216ENST00000565316 NEURL3Q96EH8 262 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 PKNOX2Q96KN3 472 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 MDFIQ99750 246 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 PCDHGB4Q9UN71 923 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 LIPT1Q9Y234 373 aa15.13■□□□□ 0.01
CLN3-216ENST00000565316 A0A1W2PP18 115 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 ZNF716A6NP11 495 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 SHISA9B4DS77 424 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 RNF223E7ERA6 249 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 MYZAPP0CAP1 466 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 GGT1P19440 569 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 FKBP2P26885 142 aaKnown RBP15.12■□□□□ 0.01
CLN3-216ENST00000565316 CASP9P55211 416 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 ABCE1P61221 599 aaKnown RBP15.12■□□□□ 0.01
CLN3-216ENST00000565316 PLAURQ03405 335 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 FUT5Q11128 374 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 CASP8Q14790 479 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 CHI3L2Q15782 390 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 ATAD3BQ5T9A4 648 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 FRRS1Q6ZNA5 592 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 DTX2Q86UW9 622 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 ZNF100Q8IYN0 542 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 LRRC34Q8IZ02 419 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 XAGE5Q8WWM1 108 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 GTPBP3Q969Y2 492 aaKnown RBP15.12■□□□□ 0.01
CLN3-216ENST00000565316 ROPN1LQ96C74 230 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 ZG16BQ96DA0 208 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 MUCL1Q96DR8 90 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 TRIM44Q96DX7 344 aaPredicted RBP15.12■□□□□ 0.01
CLN3-216ENST00000565316 TRAF4Q9BUZ4 470 aaPredicted RBP15.12■□□□□ 0.01
CLN3-216ENST00000565316 REG4Q9BYZ8 158 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 DPY30Q9C005 99 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 C20orf27Q9GZN8 174 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 SLCO5A1Q9H2Y9 848 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 EXOSC3Q9NQT5 275 aaKnown RBP15.12■□□□□ 0.01
CLN3-216ENST00000565316 CTPS2Q9NRF8 586 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 NPAP1Q9NZP6 1156 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 EMC3Q9P0I2 261 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 CHRNA9Q9UGM1 479 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 HAO1Q9UJM8 370 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 ADAM21Q9UKJ8 722 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 RAP2CQ9Y3L5 183 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 WDR45Q9Y484 360 aa15.12■□□□□ 0.01
CLN3-216ENST00000565316 SPIN1Q9Y657 262 aaPredicted RBP15.12■□□□□ 0.01
CLN3-216ENST00000565316 PRAMEF27A3QJZ7 478 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 OR5H1A6NKK0 313 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 DNPH1O43598 174 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 RAMP1O60894 148 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 CRLF1O75462 422 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 SNUPNO95149 360 aaKnown RBP15.11■□□□□ 0.01
CLN3-216ENST00000565316 PMS2P2O95744 297 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 IGHV4-39P01824 125 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 CDKN1AP38936 164 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 CLK1P49759 484 aaKnown RBP15.11■□□□□ 0.01
CLN3-216ENST00000565316 RPL14P50914 215 aaKnown RBP15.11■□□□□ 0.01
CLN3-216ENST00000565316 SLC16A1P53985 500 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 VEZF1Q14119 521 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 STK11Q15831 433 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 FBXW9Q5XUX1 488 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 TNFAIP8L2Q6P589 184 aaPredicted RBP15.11■□□□□ 0.01
CLN3-216ENST00000565316 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms