RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZFP41Q8N8Y5 198 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 NT5CQ8TCD5 201 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 APOBEC4Q8WW27 367 aaKnown RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 ZG16BQ96DA0 208 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 SGCZQ96LD1 299 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 TNFRSF13CQ96RJ3 184 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 MROQ9BYG7 248 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 WWTR1Q9GZV5 400 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ZFYVE26Q68DK2 2539 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 A0A1W2PQ72 361 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 hCG_1807616A0A1W2PRN6 198 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 CXCL13O43927 109 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ATE1O95260 518 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 CT62P0C5K7 136 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 PAX7P23759 505 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 CSNK1A1P48729 337 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 RHAGQ02094 409 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 MELKQ14680 651 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 MYBPC3Q14896 1274 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ATP6AP1Q15904 470 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 HBMQ6B0K9 141 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 CBLL1Q75N03 491 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ADGRG5Q8IZF4 528 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 LRRC18Q8N456 261 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ZNF501Q96CX3 271 aaPredicted RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 TMED9Q9BVK6 235 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ENKD1Q9H0I2 346 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 TCF7L1Q9HCS4 588 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 H0YC42 278 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 SLC30A4O14863 429 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 CHRM4P08173 479 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 TACSTD2P09758 323 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 CD1EP15812 388 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 PHC1P78364 1004 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 PPP2R2BQ00005 443 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 AIMP2Q13155 320 aaKnown RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 NIPAL3Q6P499 406 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 GFRALQ6UXV0 394 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 DLEU7Q6UYE1 221 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 SPACA9Q96E40 222 aaPredicted RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 PRRC1Q96M27 445 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 LMF2Q9BU23 707 aaKnown RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 KATNB1Q9BVA0 655 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 OR52D1Q9H346 318 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 FBXO34Q9NWN3 711 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 MIA3Q5JRA6 1907 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 IGHV3-15A0A0B4J1V0 119 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TRBV4-1A0A0J9YWV2 114 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ZNF670-ZNF695F2Z2N8 137 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TOX3O15405 576 aaPredicted RBP8.5□□□□□ -1.05
VPS39-205ENST00000562258 SLITRK5O94991 958 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 LCATP04180 440 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ABCD3P28288 659 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ELK4P28324 431 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ETV5P41161 510 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 OMPP47874 163 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ADAM8P78325 824 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 SCN1BQ07699 218 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 SPANXN2Q5MJ10 180 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 OGFOD3Q6PK18 319 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 BEST3Q8N1M1 668 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 METTL25Q8N6Q8 603 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TMEM102Q8N9M5 508 aaPredicted RBP8.5□□□□□ -1.05
VPS39-205ENST00000562258 OR2T4Q8NH00 348 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 SLC29A1Q99808 456 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 PIGQQ9BRB3 760 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 INIPQ9NRY2 104 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 SLC6A13Q9NSD5 602 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 CCDC168Q8NDH2 2452 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TRAV17A0A0B4J275 112 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 IRGMA1A4Y4 181 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ANXA2P2A6NMY6 339 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ZNF195O14628 629 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 FOXS1O43638 330 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 DNAJB5O75953 348 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 SEC14L2O76054 403 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TIAF1O95411 115 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 CELA2AP08217 269 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ITGA5P08648 1049 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ACP2P11117 423 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ST3GAL4Q11206 333 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.5□□□□□ -1.05
VPS39-205ENST00000562258 ANKRD34AQ69YU3 496 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 SLITRK4Q8IW52 837 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 GCNT2Q8N0V5 402 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 NR4A3Q92570 626 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 BCL2L14Q9BZR8 327 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 MYOTQ9UBF9 498 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 NOSIPQ9Y314 301 aaKnown RBP8.5□□□□□ -1.05
VPS39-205ENST00000562258 RALGAPA1Q6GYQ0 2036 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 IGKV1-8A0A0C4DH67 115 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 PLOD3O60568 738 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 NID1P14543 1247 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TXNL4AP83876 142 aaKnown RBP8.5□□□□□ -1.05
VPS39-205ENST00000562258 RASGEF1BQ0VAM2 473 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 MRPL49Q13405 166 aaKnown RBP8.5□□□□□ -1.05
VPS39-205ENST00000562258 KIAA0040Q15053 153 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 OTPQ5XKR4 325 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ANKRD37Q7Z713 158 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TMPRSS12Q86WS5 348 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms