RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 WDR91A4D1P6 747 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 TYROBPO43914 113 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 CYTIPO60759 359 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 DNAJA2O60884 412 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 NDUFS7O75251 213 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 STX11O75558 287 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 CSTAP01040 98 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 C1QCP02747 245 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 FESP07332 822 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 OR12D1P0DN82 309 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 IGHV1-2P23083 117 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 PHC1P78364 1004 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 EMX2Q04743 252 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 IFFO1Q0D2I5 559 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 MERTKQ12866 999 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 FAPQ12884 760 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 ARHGAP11BQ3KRB8 267 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 BHLHB9Q6PI77 547 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 Q6ZT83 130 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 ANKRD46Q86W74 232 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 OR4A15Q8NGL6 344 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 RAB8BQ92930 207 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 ZG16BQ96DA0 208 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 SLC35G5Q96KT7 338 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 TRIM2Q9C040 744 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 C20orf27Q9GZN8 174 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 ZNF350Q9GZX5 532 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 OR51I1Q9H343 314 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 AKTIPQ9H8T0 292 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 NOP53Q9NZM5 478 aaKnown RBP10.29□□□□□ -0.76
USP3-220ENST00000561381 NPAP1Q9NZP6 1156 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 LIPT1Q9Y234 373 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 ABCA1O95477 2261 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 RTTNQ86VV8 2226 aa10.29□□□□□ -0.76
USP3-220ENST00000561381 CR1P17927 2039 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 A0A1W2PP18 115 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 DUXAA6NLW8 204 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 CLDN24A6NM45 220 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 SHISA9B4DS77 424 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 RNASET2O00584 256 aaKnown RBP10.28□□□□□ -0.76
USP3-220ENST00000561381 SCN2BO60939 215 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 CD8AP01732 235 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 IGHV3-9P01782 118 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 PTNP21246 168 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 PGM1P36871 562 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 ACVR1BP36896 505 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 DIO1P49895 249 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 PLAURQ03405 335 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 FUT5Q11128 374 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 SYT14P1Q58G82 188 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 TYW3Q6IPR3 259 aaKnown RBP10.28□□□□□ -0.76
USP3-220ENST00000561381 HEPHL1Q6MZM0 1159 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 TNFAIP8L2Q6P589 184 aaPredicted RBP10.28□□□□□ -0.76
USP3-220ENST00000561381 TMPPEQ6ZT21 453 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 C16orf62Q7Z3J2 963 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 NUDCD3Q8IVD9 361 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 ZNF781Q8N8C0 355 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 XAGE5Q8WWM1 108 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 ST8SIA1Q92185 356 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 GTPBP3Q969Y2 492 aaKnown RBP10.28□□□□□ -0.76
USP3-220ENST00000561381 TRMT61AQ96FX7 289 aaKnown RBP10.28□□□□□ -0.76
USP3-220ENST00000561381 REG4Q9BYZ8 158 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 NGBQ9NPG2 151 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 CTPS2Q9NRF8 586 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 ACER3Q9NUN7 267 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 ASIC5Q9NY37 505 aa10.28□□□□□ -0.76
USP3-220ENST00000561381 GDF2Q9UK05 429 aaPredicted RBP10.28□□□□□ -0.76
USP3-220ENST00000561381 PRAMEF27A3QJZ7 478 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 ZNF724A8MTY0 619 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 SULT2B1O00204 365 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 KIAA0513O60268 411 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 ADAM11O75078 769 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 CPSF4O95639 269 aaKnown RBP10.27□□□□□ -0.77
USP3-220ENST00000561381 AK1P00568 194 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 IGHV4-39P01824 125 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 THBS1P07996 1170 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 TFPIP10646 304 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 PGCP20142 388 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 COX5AP20674 150 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 NTF4P34130 210 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 RYKP34925 604 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 MAD2L1Q13257 205 aaPredicted RBP10.27□□□□□ -0.77
USP3-220ENST00000561381 PPA1Q15181 289 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 CHI3L2Q15782 390 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 ABLIM2Q6H8Q1 611 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 EIF3MQ7L2H7 374 aaKnown RBP10.27□□□□□ -0.77
USP3-220ENST00000561381 GALNT5Q7Z7M9 940 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 ZNF100Q8IYN0 542 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 FAM71CQ8NEG0 241 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 OR8J2Q8NGG1 315 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 MIPOL1Q8TD10 442 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 AENQ8WTP8 325 aaKnown RBP10.27□□□□□ -0.77
USP3-220ENST00000561381 ARL5BQ96KC2 179 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 TRAF4Q9BUZ4 470 aaPredicted RBP10.27□□□□□ -0.77
USP3-220ENST00000561381 CCDC106Q9BWC9 280 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 ROPN1BQ9BZX4 212 aaPredicted RBP10.27□□□□□ -0.77
USP3-220ENST00000561381 DPY30Q9C005 99 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 OR11A1Q9GZK7 315 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 SLCO5A1Q9H2Y9 848 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 ROPN1Q9HAT0 212 aaPredicted RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms