RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 PCSK5Q92824 1860 aa9.68□□□□□ -0.86
TPM1-229ENST00000561242 ANKRD11Q6UB99 2663 aaPredicted RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 CD8B2A6NJW9 211 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 CLDN24A6NM45 220 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 CLCA1A8K7I4 914 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 A8MVM7 634 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 TNFSF11O14788 317 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 PRKD3O94806 890 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 LGI1O95970 557 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 TMIGD3P0DMS9 266 aaPredicted RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 ZNF708P17019 499 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 HOXB6P17509 224 aaKnown RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 RPS4Y1P22090 263 aaKnown RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 IDUAP35475 653 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 GFRA1P56159 465 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 SELENOWP63302 87 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 FUT5Q11128 374 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 FOXD4Q12950 439 aaPredicted RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 RNPS1Q15287 305 aaKnown RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 NPTX1Q15818 432 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 SYT14P1Q58G82 188 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 MTX3Q5HYI7 312 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 RIPPLY2Q5TAB7 128 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 AP1ARQ63HQ0 302 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 NSUN5P2Q63ZY6 315 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 TMEM225Q6GV28 225 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 DHFR2Q86XF0 187 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 PTOV1Q86YD1 416 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 CLIP4Q8N3C7 705 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 ZNF808Q8N4W9 903 aaPredicted RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 RNF148Q8N7C7 305 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 CNEP1R1Q8N9A8 125 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 OR10D3Q8NH80 312 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 GEMIN6Q8WXD5 167 aaKnown RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 SLC38A4Q969I6 547 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 GPATCH1Q9BRR8 931 aaKnown RBP9.67□□□□□ -0.86
TPM1-229ENST00000561242 ASPNQ9BXN1 380 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 KLHL4Q9C0H6 718 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 PRDM14Q9GZV8 571 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 C1orf21Q9H246 121 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 IKZF5Q9H5V7 419 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 YY1AP1Q9H869 796 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 SLC24A3Q9HC58 644 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 CTPS2Q9NRF8 586 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 EMC3Q9P0I2 261 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 TMEM181Q9P2C4 612 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 ZNF175Q9Y473 711 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 SNX13Q9Y5W8 968 aa9.67□□□□□ -0.86
TPM1-229ENST00000561242 DSPPQ9NZW4 1301 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 PRAMEF27A3QJZ7 478 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 TRAPPC13A5PLN9 417 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 CPSF4LA6NMK7 179 aaKnown RBP9.66□□□□□ -0.86
TPM1-229ENST00000561242 SHISA8B8ZZ34 492 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 GNGT2O14610 69 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 ZNF208O43345 1280 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 CXCL13O43927 109 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 FMO6PO60774 539 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 DNAJC8O75937 253 aaPredicted RBP9.66□□□□□ -0.86
TPM1-229ENST00000561242 SMNDC1O75940 238 aaKnown RBP eCLIP9.66□□□□□ -0.861e-8■■□□□ 11.9
TPM1-229ENST00000561242 KRT33AO76009 404 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 UBOX5O94941 541 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 UMPSP11172 480 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 NQO1P15559 274 aaKnown RBP9.66□□□□□ -0.86
TPM1-229ENST00000561242 CTSSP25774 331 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 TIMP3P35625 211 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 LHX2P50458 406 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 RAC3P60763 192 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 CHRNB3Q05901 458 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 ST3GAL3Q11203 375 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 C1DQ13901 141 aaKnown RBP9.66□□□□□ -0.86
TPM1-229ENST00000561242 PON3Q15166 354 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 OR1Q1Q15612 314 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 ADRM1Q16186 407 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 ACSF3Q4G176 576 aaPredicted RBP9.66□□□□□ -0.86
TPM1-229ENST00000561242 FAM98BQ52LJ0 330 aaKnown RBP9.66□□□□□ -0.86
TPM1-229ENST00000561242 ZNF613Q6PF04 617 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 CARM1Q86X55 608 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 CALHM3Q86XJ0 350 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 RBM15BQ8NDT2 890 aaKnown RBP9.66□□□□□ -0.86
TPM1-229ENST00000561242 SLC25A36Q96CQ1 311 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 MPP4Q96JB8 637 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 HS6ST2Q96MM7 605 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 TUBA1CQ9BQE3 449 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 TTYH2Q9BSA4 534 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 BTBD10Q9BSF8 475 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 RTN4RQ9BZR6 473 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 MMADHCQ9H3L0 296 aaPredicted RBP9.66□□□□□ -0.86
TPM1-229ENST00000561242 C12orf10Q9HB07 376 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 CHST11Q9NPF2 352 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 KLHL9Q9P2J3 617 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 KCNE5Q9UJ90 142 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 TMCC3Q9ULS5 477 aa9.66□□□□□ -0.86
TPM1-229ENST00000561242 CROCCQ5TZA2 2017 aa9.65□□□□□ -0.86
TPM1-229ENST00000561242 EEF1E1-BLOC1S5C9J1V9 151 aa9.65□□□□□ -0.86
TPM1-229ENST00000561242 M0R3H8 397 aa9.65□□□□□ -0.86
TPM1-229ENST00000561242 FXYD1O00168 92 aa9.65□□□□□ -0.86
TPM1-229ENST00000561242 NME4O00746 187 aa9.65□□□□□ -0.86
TPM1-229ENST00000561242 GPR171O14626 319 aa9.65□□□□□ -0.86
TPM1-229ENST00000561242 EEF1E1O43324 174 aaKnown RBP9.65□□□□□ -0.86
TPM1-229ENST00000561242 AKAP8O43823 692 aaKnown RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms