RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 Q6ZPB1 254 aaPredicted RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 ESPNLQ6ZVH7 1005 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 FKBP9P1Q75LS8 142 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 CYP4Z1Q86W10 505 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 DHFR2Q86XF0 187 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 UBQLNLQ8IYU4 475 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 GPR32P1Q8NGA4 272 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 OR5M1Q8NGP8 315 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 POC1BQ8TC44 478 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 SMPDL3BQ92485 455 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 DDIT4LQ96D03 193 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 SLC47A1Q96FL8 570 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 KLHL15Q96M94 604 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 MCHR1Q99705 422 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 TIMP4Q99727 224 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 TIGARQ9NQ88 270 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 DCAF13Q9NV06 445 aaKnown RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 OSGIN2Q9Y236 505 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 ZNF835Q9Y2P0 537 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 ZNF337Q9Y3M9 751 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 TMED7-TICAM2A0A0A6YYA0 188 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 A0A0B4J2E0 115 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 A0A1B0GX12 115 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ELOA3DA6NLF2 546 aaPredicted RBP9.09□□□□□ -0.95
USP3-216ENST00000559873 SHISA8B8ZZ34 492 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 J3QKU1 62 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 EIF1AYO14602 144 aaKnown RBP9.09□□□□□ -0.95
USP3-216ENST00000559873 GSC2O15499 205 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ZNF208O43345 1280 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ADAM11O75078 769 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 CIB2O75838 187 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 STSP08842 583 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 PRG2P13727 222 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 PLA2G2AP14555 144 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ITGA2P17301 1181 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ACVR2AP27037 513 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 LHX2P50458 406 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ZNF136P52737 540 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 CLDN18P56856 261 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 TAS2R41P59536 307 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 SRYQ05066 204 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 TRAP1Q12931 704 aaKnown RBP9.09□□□□□ -0.95
USP3-216ENST00000559873 MRPL49Q13405 166 aaKnown RBP9.09□□□□□ -0.95
USP3-216ENST00000559873 FLOT2Q14254 428 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ESPL1Q14674 2120 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 SGCBQ16585 318 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ELOA3BQ3SY89 546 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 GXYLT1Q4G148 440 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 SYT14P1Q58G82 188 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ALG10BQ5I7T1 473 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 C1orf185Q5T7R7 199 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ZNF585AQ6P3V2 769 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 B3GNT6Q6ZMB0 384 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ZGRF1Q86YA3 2104 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 CHERPQ8IWX8 916 aaKnown RBP9.09□□□□□ -0.95
USP3-216ENST00000559873 ULK2Q8IYT8 1036 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 LILRA2Q8N149 483 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ELOA3Q8NG57 546 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 OR6T1Q8NGN1 323 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 OR5M9Q8NGP3 310 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 OR2V1Q8NHB1 315 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 PRR7Q8TB68 274 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 RNF217Q8TC41 542 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ZPLD1Q8TCW7 415 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 C3orf49Q96BT1 292 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 WDYHV1Q96HA8 205 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 PRRC1Q96M27 445 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 PCDHAC1Q9H158 963 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 TMEM185BQ9H7F4 350 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 CTPS2Q9NRF8 586 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 PNPLA3Q9NST1 481 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 ALKBH4Q9NXW9 302 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 TNFRSF10DQ9UBN6 386 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 SH3BGRL2Q9UJC5 107 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 OSGIN1Q9UJX0 560 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 MCTS1Q9ULC4 181 aaKnown RBP9.09□□□□□ -0.95
USP3-216ENST00000559873 TMED7Q9Y3B3 224 aa9.09□□□□□ -0.95
USP3-216ENST00000559873 NCKAP5O14513 1909 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 A0A1B0GWA3 101 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 TRAPPC13A5PLN9 417 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 CPSF4LA6NMK7 179 aaKnown RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 E9PLN8 166 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 DNPH1O43598 174 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 CHP2O43745 196 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 OR5F1O95221 314 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 AHSA1O95433 338 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 EPPINO95925 133 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 TFPIP10646 304 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 THRBP10828 461 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 HTR2AP28223 471 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 SFTPDP35247 375 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 EIF1AXP47813 144 aaKnown RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 STARP49675 285 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 CSNK2A1P68400 391 aaPredicted RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 HOXC5Q00444 222 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 OR1Q1Q15612 314 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 C3AR1Q16581 482 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 ACSF3Q4G176 576 aaPredicted RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 ENTPD8Q5MY95 495 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 DCST1Q5T197 706 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms