RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 PARP10Q53GL7 1025 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 RAB12Q6IQ22 244 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 ACOT7LQ6ZUV0 252 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 COX15Q7KZN9 410 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 MTURNQ8N3F0 131 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 PNKDQ8N490 385 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 OR51G1Q8NGK1 321 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 TCTEX1D2Q8WW35 142 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 MYLPFQ96A32 169 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 RPUSD4Q96CM3 377 aaKnown RBP2.13□□□□□ -2.07
VPS13C-207ENST00000558919 RNF185Q96GF1 192 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 FAM111AQ96PZ2 611 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 OR2M2Q96R28 347 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 KCNK16Q96T55 309 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 GAL3ST1Q99999 423 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 RASL11BQ9BPW5 248 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 SMYD3Q9H7B4 428 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 NECAP2Q9NVZ3 263 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 NINJ2Q9NZG7 142 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 AIPL1Q9NZN9 384 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 KIF25Q9UIL4 384 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 B9D1Q9UPM9 204 aa2.13□□□□□ -2.07
VPS13C-207ENST00000558919 ATP10DQ9P241 1426 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 IGLV4-60A0A075B6I1 120 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 PPIAL4CA0A0B4J2A2 164 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 CLDN5O00501 218 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 RIPK2O43353 540 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 OR4F21O95013 312 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 PPIAL4GP0DN37 164 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 CRISP2P16562 243 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 PGCP20142 388 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 HNRNPA2B1P22626 353 aaKnown RBP2.12□□□□□ -2.07
VPS13C-207ENST00000558919 PSMA2P25787 234 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 SH3BGRP55822 239 aaPredicted RBP2.12□□□□□ -2.07
VPS13C-207ENST00000558919 CSTF1Q05048 431 aaKnown RBP2.12□□□□□ -2.07
VPS13C-207ENST00000558919 CEBPEQ15744 281 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 MAPK6Q16659 721 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 KLF17Q5JT82 389 aaPredicted RBP2.12□□□□□ -2.07
VPS13C-207ENST00000558919 C11orf71Q6IPW1 123 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 CCDC137Q6PK04 289 aaKnown RBP2.12□□□□□ -2.07
VPS13C-207ENST00000558919 ZFP2Q6ZN57 461 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 ACP7Q6ZNF0 438 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 RFLNAQ6ZTI6 216 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 CATSPER4Q7RTX7 472 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 ZNF619Q8N2I2 560 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 ZNF561Q8N587 486 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 OR51S1Q8NGJ8 323 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 OR6X1Q8NH79 312 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 KIR2DL5BQ8NHK3 375 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 PNPT1Q8TCS8 783 aaKnown RBP2.12□□□□□ -2.07
VPS13C-207ENST00000558919 TMEM237Q96Q45 408 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 SLC6A7Q99884 636 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 GSDMCQ9BYG8 508 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 SELENOIQ9C0D9 397 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 HSD3B7Q9H2F3 369 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 NTN4Q9HB63 628 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 NUDT15Q9NV35 164 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 TREM2Q9NZC2 230 aa2.12□□□□□ -2.07
VPS13C-207ENST00000558919 IGHV3OR16-13A0A075B7E8 117 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 A0A096LNJ9 63 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 ERVV-1B6SEH8 477 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 KIF2AO00139 706 aaPredicted RBP2.11□□□□□ -2.07
VPS13C-207ENST00000558919 PRKYO43930 277 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 SLC25A27O95847 323 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 PCCBP05166 539 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 ARF4P18085 180 aaPredicted RBP2.11□□□□□ -2.07
VPS13C-207ENST00000558919 TPSB2P20231 275 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 CCND2P30279 289 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 RABIFP47224 123 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 PRKXP51817 358 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 CUL1Q13616 776 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 PTGES3Q15185 160 aaKnown RBP2.11□□□□□ -2.07
VPS13C-207ENST00000558919 TPSAB1Q15661 275 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 CNSTQ6PJW8 725 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 CBLN3Q6UW01 205 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 UNC5DQ6UXZ4 953 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 GDPD3Q7L5L3 318 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 ERASQ7Z444 233 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 TPRX1Q8N7U7 411 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 OR56B4Q8NH76 319 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 SELENOMQ8WWX9 145 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 RPL3LQ92901 407 aaKnown RBP2.11□□□□□ -2.07
VPS13C-207ENST00000558919 FOPNLQ96NB1 174 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 KCNA7Q96RP8 456 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 HIST1H4GQ99525 98 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 SPATA16Q9BXB7 569 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 MRPL13Q9BYD1 178 aaKnown RBP2.11□□□□□ -2.07
VPS13C-207ENST00000558919 EML4Q9HC35 981 aaKnown RBP2.11□□□□□ -2.07
VPS13C-207ENST00000558919 NGBQ9NPG2 151 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 ERVW-1Q9UQF0 538 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 PIN4Q9Y237 131 aaKnown RBP2.11□□□□□ -2.07
VPS13C-207ENST00000558919 FRMPD3Q5JV73 1810 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 FRMPD4Q14CM0 1322 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 LRP4O75096 1905 aa2.11□□□□□ -2.07
VPS13C-207ENST00000558919 A0A1W2PQ67 120 aa2.1□□□□□ -2.07
VPS13C-207ENST00000558919 BICDL2A1A5D9 508 aa2.1□□□□□ -2.07
VPS13C-207ENST00000558919 CTAGE5O15320 804 aa2.1□□□□□ -2.07
VPS13C-207ENST00000558919 MSH4O15457 936 aa2.1□□□□□ -2.07
VPS13C-207ENST00000558919 OR10H3O60404 316 aa2.1□□□□□ -2.07
VPS13C-207ENST00000558919 MED6O75586 246 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms