RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 ZW10O43264 779 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 BUB1O43683 1085 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 PEX11AO75192 247 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 NOL4O94818 638 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 OR5F1O95221 314 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 PNPP00491 289 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 KRT14P02533 472 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 ODC1P11926 461 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 POLR2EP19388 210 aaKnown RBP3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CYP2F1P24903 491 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CASP1P29466 404 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 EVI2BP34910 448 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CDX1P47902 265 aaPredicted RBP3.63□□□□□ -1.83
PRPF39-209ENST00000556353 RIPK1Q13546 671 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 NCF4Q15080 339 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 STK38Q15208 465 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 SF3A2Q15428 464 aaKnown RBP3.63□□□□□ -1.83
PRPF39-209ENST00000556353 HADHQ16836 314 aaKnown RBP3.63□□□□□ -1.83
PRPF39-209ENST00000556353 HSP90AA5PQ58FG0 334 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.63□□□□□ -1.83
PRPF39-209ENST00000556353 ATL3Q6DD88 541 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF720Q7Z2F6 126 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 NANOGNBQ7Z5D8 188 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 KIAA1328Q86T90 577 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 LUZP1Q86V48 1076 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CBWD2Q8IUF1 395 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 FAM219AQ8IW50 185 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CDH26Q8IXH8 852 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CMTM8Q8IZV2 173 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 APCDD1Q8J025 514 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF565Q8N9K5 539 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 LPCAT1Q8NF37 534 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 KRT35Q92764 455 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 AK8Q96MA6 479 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CYP2S1Q96SQ9 504 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 FAM213AQ9BRX8 229 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 TRIM9Q9C026 710 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 DPEP3Q9H4B8 488 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 THAP9Q9H5L6 903 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 LRRC19Q9H756 370 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 POLE3Q9NRF9 147 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.63□□□□□ -1.83
PRPF39-209ENST00000556353 GCNT4Q9P109 453 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 KIAA1257Q9ULG3 409 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 MGAT4AQ9UM21 535 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 NCKAP1Q9Y2A7 1128 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CBY1Q9Y3M2 126 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CRYBG3Q68DQ2 2970 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 ANKRD36A6QL64 1941 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 RP1L1Q8IWN7 2480 aaPredicted RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 TRPM6Q9BX84 2022 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 RNF103-CHMP3A0A140T963 221 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 IGLON5A6NGN9 336 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 OR5K4A6NMS3 321 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 HSBP1L1C9JCN9 74 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 NPIPA3F8WFD2 350 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 H3BQV1 296 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 SLC30A4O14863 429 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 PGRMC2O15173 223 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 HDAC3O15379 428 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 OR6B1O95007 311 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 C9P02748 559 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 IVLP07476 585 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 SPP1P10451 314 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 ANXA8P13928 327 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 TCF4P15884 667 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF19P17023 458 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 SYT1P21579 422 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 BCKDHBP21953 392 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 GALP22466 123 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 ANXA13P27216 316 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 SPRP35270 261 aaPredicted RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 CXCL12P48061 93 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 CARD18P57730 90 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 ASIC1P78348 528 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 IGLV3-21P80748 117 aaPredicted RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 TFAMQ00059 246 aaKnown RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 GFPT1Q06210 699 aaPredicted RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 CAMK2DQ13557 499 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 TAZQ16635 292 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 RGS21Q2M5E4 152 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 TEX35Q5T0J7 233 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 ANXA8L1Q5VT79 327 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 SHEQ5VZ18 495 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 TMEM64Q6YI46 380 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 PIWIL3Q7Z3Z3 882 aaKnown RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 RALGPS2Q86X27 583 aaPredicted RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 ELMOD1Q8N336 334 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 LEMD2Q8NC56 503 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 ENKURQ8TC29 256 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 SLC22A8Q8TCC7 542 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 DDI1Q8WTU0 396 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 MYLPFQ96A32 169 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 EFHD2Q96C19 240 aaPredicted RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 ANKRD27Q96NW4 1050 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 SECISBP2Q96T21 854 aaKnown RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 CCT7Q99832 543 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 MRPL45Q9BRJ2 306 aaKnown RBP3.62□□□□□ -1.83
PRPF39-209ENST00000556353 SLC25A23Q9BV35 468 aa3.62□□□□□ -1.83
PRPF39-209ENST00000556353 PINK1Q9BXM7 581 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms