RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 SPASTQ9UBP0 616 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF346Q9UL40 294 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ODF2LQ9ULJ1 636 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SLC6A5Q9Y345 797 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 FBXO7Q9Y3I1 522 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ATG4BQ9Y4P1 393 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 UBIAD1Q9Y5Z9 338 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SMAD5-AS1Q9Y6J3 95 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TLN2Q9Y4G6 2542 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MYO7BQ6PIF6 2116 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF106Q9H2Y7 1883 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 NYNRINQ9P2P1 1898 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 COL1A2P08123 1366 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ZMYM6O95789 1325 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SHANK1Q9Y566 2161 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 STAB1Q9NY15 2570 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 IGHV1OR15-9A0A0B4J2B8 117 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 IGHV3-16A0A0C4DH30 117 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 VPS37CA5D8V6 355 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SMCO2A6NFE2 343 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ACOD1A6NK06 481 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SHISA9B4DS77 424 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 K7EQS6 105 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 K7ERI5 159 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CFLARO15519 480 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SSX5O60225 188 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 NEBLO76041 1014 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TDP2O95551 362 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SEMA4FO95754 770 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MT-ATP6P00846 226 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MT-ND1P03886 318 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 GSTA1P08263 222 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 HOXD4P09016 255 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CCDC159P0C7I6 412 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 AZU1P20160 251 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 IL10P22301 178 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MAPK3P27361 379 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 PPP2R1BP30154 601 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MAT2AP31153 395 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 HOXA9P31269 272 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TRIM23P36406 574 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 OPRD1P41143 372 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 NPY2RP49146 381 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SLC26A2P50443 739 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 RPL10AP62906 217 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 LAMTOR4Q0VGL1 99 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TRDNQ13061 729 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 NME3Q13232 169 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 IMMTQ16891 758 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TMEM44Q2T9K0 475 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ANKRD55Q3KP44 614 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 AGKQ53H12 422 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TOR1AIP1Q5JTV8 583 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TCHHL1Q5QJ38 904 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 WDR25Q64LD2 544 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ARMCX5Q6P1M9 558 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SLC25A42Q86VD7 318 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SLC47A2Q86VL8 602 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ELMOD2Q8IZ81 293 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CMTM8Q8IZV2 173 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 KDM8Q8N371 416 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MLKLQ8NB16 471 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CSNK1G2-AS1Q8NCQ2 148 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 BEST4Q8NFU0 473 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 PHYHIPQ92561 330 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MBOAT7Q96N66 472 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ACCSQ96QU6 501 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 LXNQ9BS40 222 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ATG10Q9H0Y0 220 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ADNPQ9H2P0 1102 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 RNF41Q9H4P4 317 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 FAM124BQ9H5Z6 455 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 GNB4Q9HAV0 340 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 IL1RL2Q9HB29 575 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SLC7A10Q9NS82 523 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TAS2R16Q9NYV7 291 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 NINJ2Q9NZG7 142 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 LHX3Q9UBR4 397 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SEC14L4Q9UDX3 406 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 HOOK1Q9UJC3 728 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MMP17Q9ULZ9 603 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF175Q9Y473 711 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 STYXL1Q9Y6J8 313 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ABCA4P78363 2273 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 POLEQ07864 2286 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 FLNAP21333 2647 aaKnown RBP1.2□□□□□ -2.22
PRPF39-208ENST00000554785 NFASCO94856 1347 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 PTPRJQ12913 1337 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 IGLV3-22A0A075B6J6 115 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 IGKV6D-21A0A0A0MT36 114 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 A0A0A6YYD4 124 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 A0A1B0GTH9 108 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 CYB561D2O14569 222 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 EI24O14681 340 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 TRDMT1O14717 391 aaKnown RBP1.2□□□□□ -2.22
PRPF39-208ENST00000554785 MSH4O15457 936 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 PRPSAP2O60256 369 aa1.2□□□□□ -2.22
PRPF39-208ENST00000554785 GALR3O60755 368 aaPredicted RBP1.2□□□□□ -2.22
PRPF39-208ENST00000554785 OAS1P00973 400 aaKnown RBP1.2□□□□□ -2.22
PRPF39-208ENST00000554785 HCKP08631 526 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms