RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ZNF16P17020 682 aaPredicted RBP13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 TTKP33981 857 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 SOAT1P35610 550 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 CHRNEQ04844 493 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 FUT5Q11128 374 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 CBFBQ13951 182 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 KRTAP24-1Q3LI83 254 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 C6orf136Q5SQH8 315 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 IL23RQ5VWK5 629 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 TMPPEQ6ZT21 453 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 GALNT5Q7Z7M9 940 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 ARIH2OSQ8N7S6 290 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 TOR1AIP2Q8NFQ8 470 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 SFXN5Q8TD22 340 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 COQ8BQ96D53 544 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 C1QTNF6Q9BXI9 259 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 OR11A1Q9GZK7 315 aa13.6□□□□□ -0.23
CLSTN3-213ENST00000541953 IGKV3D-15A0A087WSY6 115 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 CLDN24A6NM45 220 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 CHEK2O96017 543 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 ITGA5P08648 1049 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 CD40P25942 277 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 MERTKQ12866 999 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 ZNF141Q15928 474 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 SYT14P1Q58G82 188 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 C9orf135Q5VTT2 229 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 CCDC103Q8IW40 242 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 ZNF100Q8IYN0 542 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 FAM71CQ8NEG0 241 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 OR52E4Q8NGH9 312 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 UBLCP1Q8WVY7 318 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 MUCL1Q96DR8 90 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 TNFRSF13CQ96RJ3 184 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 RHNO1Q9BSD3 238 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 TRMOQ9BU70 441 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 CCDC106Q9BWC9 280 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 NMUR2Q9GZQ4 415 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 LAT2Q9GZY6 243 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 BARX1Q9HBU1 254 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 CTPS2Q9NRF8 586 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 CBLN4Q9NTU7 201 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 ZDHHC2Q9UIJ5 367 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 ARFGEF3Q5TH69 2177 aa13.59□□□□□ -0.23
CLSTN3-213ENST00000541953 PRAMEF27A3QJZ7 478 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 ELOA3DA6NLF2 546 aaPredicted RBP13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 TMEM114B3SHH9 223 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 SULT2B1O00204 365 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 CFLARO15519 480 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 NPHS1O60500 1241 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 FAM157CP0CG43 387 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 G6PDP11413 515 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 PGM1P36871 562 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 GABRA6Q16445 453 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 ELOA3BQ3SY89 546 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 AGAP6Q5VW22 663 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 FBXW9Q5XUX1 488 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 OR4F3Q6IEY1 312 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 SLC22A25Q6T423 547 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 IL17RELQ6ZVW7 336 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 C6orf120Q7Z4R8 191 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 WDR31Q8NA23 367 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 ELOA3Q8NG57 546 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 ST8SIA1Q92185 356 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 ZG16BQ96DA0 208 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 APOPT1Q96IL0 206 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 PPP3R2Q96LZ3 170 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 DHRS9Q9BPW9 319 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 USB1Q9BQ65 265 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 DUSP26Q9BV47 211 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 ZNF350Q9GZX5 532 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 L2HGDHQ9H9P8 463 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 ACER3Q9NUN7 267 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 FAIMQ9NVQ4 179 aa13.58□□□□□ -0.24
CLSTN3-213ENST00000541953 RNF103-CHMP3A0A140T963 221 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 M0R1B8 84 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 PDLIM1O00151 329 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 KIAA0513O60268 411 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 SPAG7O75391 227 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 CSTAP01040 98 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 IGHV4-31P0DP07 118 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 CREB1P16220 341 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 DDX5P17844 614 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 MATN1P21941 496 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 VLDLRP98155 873 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 LOXL1Q08397 574 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 NRF1Q16656 503 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 TYW3Q6IPR3 259 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 MTDHQ86UE4 582 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 UBE2J2Q8N2K1 259 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 MUC15Q8N387 334 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 FNDC5Q8NAU1 212 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 C10orf105Q8TEF2 133 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 TMEM158Q8WZ71 300 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 RAB8BQ92930 207 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 SLC35G5Q96KT7 338 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 BHLHE41Q9C0J9 482 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 OR51I1Q9H343 314 aa13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 NOSIPQ9Y314 301 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-213ENST00000541953 CIB4A0PJX0 185 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms