RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 VAPAQ9P0L0 249 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 PRDM4Q9UKN5 801 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 CLEC4AQ9UMR7 237 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 TESMINQ9Y4I5 508 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 NF1P21359 2839 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 ABCA4P78363 2273 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 A0A0G2JPF8 293 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 A0A1W2PNR3 127 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 HNRNPCL2B2RXH8 293 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 HNRNPCL3B7ZW38 293 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 HNRNPCL1O60812 293 aaKnown RBP12.66□□□□□ -0.38
USP28-209ENST00000540925 SMNDC1O75940 238 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP28-209ENST00000540925 BCHEP06276 602 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 THBS1P07996 1170 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 HNRNPCL4P0DMR1 293 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 ENPP1P22413 925 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 UGT2B10P36537 528 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 MERTKQ12866 999 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 EPS8Q12929 822 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 RNPS1Q15287 305 aaKnown RBP12.66□□□□□ -0.38
USP28-209ENST00000540925 TESK1Q15569 626 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 AGKQ53H12 422 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 SYT14P1Q58G82 188 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 METTL21CQ5VZV1 264 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 CGB2Q6NT52 195 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 ZNF836Q6ZNA1 936 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 CDH24Q86UP0 819 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 VRK2Q86Y07 508 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 ABHD3Q8WU67 409 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 SLC25A43Q8WUT9 341 aaPredicted RBP12.66□□□□□ -0.38
USP28-209ENST00000540925 THOC1Q96FV9 657 aaKnown RBP12.66□□□□□ -0.38
USP28-209ENST00000540925 GPATCH1Q9BRR8 931 aaKnown RBP12.66□□□□□ -0.38
USP28-209ENST00000540925 PRRG4Q9BZD6 226 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 ADAM19Q9H013 955 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 RAD21L1Q9H4I0 556 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 IKZF5Q9H5V7 419 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 BCO1Q9HAY6 547 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 TIGARQ9NQ88 270 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 CTPS2Q9NRF8 586 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 RLIMQ9NVW2 624 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 KLHL13Q9P2N7 655 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 DCTN4Q9UJW0 460 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 EMC9Q9Y3B6 208 aa12.66□□□□□ -0.38
USP28-209ENST00000540925 ZNF469Q96JG9 3925 aaPredicted RBP12.66□□□□□ -0.38
USP28-209ENST00000540925 SH3D21A4FU49 640 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 SMAD9O15198 467 aaKnown RBP12.65□□□□□ -0.38
USP28-209ENST00000540925 PABPC4LP0CB38 370 aaKnown RBP12.65□□□□□ -0.38
USP28-209ENST00000540925 ARAFP10398 606 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 IL7RP16871 459 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 GPX2P18283 190 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 KLK2P20151 261 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 RYKP34925 604 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 CPOXP36551 454 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 ACAA2P42765 397 aaKnown RBP12.65□□□□□ -0.38
USP28-209ENST00000540925 IDH2P48735 452 aaKnown RBP12.65□□□□□ -0.38
USP28-209ENST00000540925 GNA13Q14344 377 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 ADRM1Q16186 407 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 LIN52Q52LA3 116 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 RPS26P11Q5JNZ5 115 aaPredicted RBP12.65□□□□□ -0.38
USP28-209ENST00000540925 TMPPEQ6ZT21 453 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 C22orf34Q6ZV56 151 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 FCRLAQ7L513 359 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 RETREG3Q86VR2 466 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 TMEM200AQ86VY9 491 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 PEX5LQ8IYB4 626 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 DPP10Q8N608 796 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 ATP6V1C2Q8NEY4 427 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 OR52P1PQ8NH57 321 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 TSPEARQ8WU66 669 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 MAL2Q969L2 176 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 CPPED1Q9BRF8 314 aaPredicted RBP12.65□□□□□ -0.38
USP28-209ENST00000540925 RABEP2Q9H5N1 569 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 CCDC134Q9H6E4 229 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 CHRNA9Q9UGM1 479 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 PROCRQ9UNN8 238 aa12.65□□□□□ -0.38
USP28-209ENST00000540925 ZNF443Q9Y2A4 671 aaPredicted RBP12.65□□□□□ -0.38
USP28-209ENST00000540925 CFAP73A6NFT4 308 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 SIAH2O43255 324 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 CYTIPO60759 359 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 HRGP04196 525 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 PPIBP23284 216 aaKnown RBP12.64□□□□□ -0.39
USP28-209ENST00000540925 FKBP2P26885 142 aaKnown RBP12.64□□□□□ -0.39
USP28-209ENST00000540925 SLC7A1P30825 629 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 SLC1A3P43003 542 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 HTR3AP46098 478 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 CLK1P49759 484 aaKnown RBP12.64□□□□□ -0.39
USP28-209ENST00000540925 DIO1P49895 249 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 ZSWIM7Q19AV6 140 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 GTF2IRD2BQ6EKJ0 949 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 ABLIM2Q6H8Q1 611 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 STAC2Q6ZMT1 411 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 GTF2IRD2Q86UP8 949 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 LSRQ86X29 649 aaPredicted RBP12.64□□□□□ -0.39
USP28-209ENST00000540925 CDC20BQ86Y33 519 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 ZNF440Q8IYI8 595 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 SLC43A2Q8N370 569 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 CLIP4Q8N3C7 705 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 NRGNQ92686 78 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 ARL5BQ96KC2 179 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 WFIKKN1Q96NZ8 548 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms