RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ARFGAP2Q8N6H7 521 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 PIWIL2Q8TC59 973 aaKnown RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 MIPOL1Q8TD10 442 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 OIT3Q8WWZ8 545 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 IGFBPL1Q8WX77 278 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 ROPN1LQ96C74 230 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 ZNF300Q96RE9 604 aaPredicted RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 TMEM109Q9BVC6 243 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 KCNK9Q9NPC2 374 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 FAIMQ9NVQ4 179 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 MARCOQ9UEW3 520 aaPredicted RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 DSCAMO60469 2012 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 CIB4A0PJX0 185 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 CCT8L1PA6NM43 557 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 ESPNB1AK53 854 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 INAFM1C9JVW0 142 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 TM9SF1O15321 606 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 KIAA0513O60268 411 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 LBPP18428 481 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 FKBP2P26885 142 aaKnown RBP13.05□□□□□ -0.32
VPS28-215ENST00000531924 STX3Q13277 289 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 TNK1Q13470 666 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 DPY19L1Q2PZI1 675 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 ZNF672Q499Z4 452 aaPredicted RBP13.05□□□□□ -0.32
VPS28-215ENST00000531924 HEPHL1Q6MZM0 1159 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.05□□□□□ -0.32
VPS28-215ENST00000531924 MTDHQ86UE4 582 aaKnown RBP13.05□□□□□ -0.32
VPS28-215ENST00000531924 P2RY8Q86VZ1 359 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 TRIML2Q8N7C3 387 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 KBTBD8Q8NFY9 601 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 APH1AQ96BI3 265 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 ZNF524Q96C55 264 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 HS6ST2Q96MM7 605 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 PAIP2Q9BPZ3 127 aaKnown RBP13.05□□□□□ -0.32
VPS28-215ENST00000531924 SLC35A5Q9BS91 424 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 NUF2Q9BZD4 464 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 CHRNA9Q9UGM1 479 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 KCNE5Q9UJ90 142 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 LIPT1Q9Y234 373 aa13.05□□□□□ -0.32
VPS28-215ENST00000531924 NOSIPQ9Y314 301 aaKnown RBP13.05□□□□□ -0.32
VPS28-215ENST00000531924 ROS1P08922 2347 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 CENPVL1A0A0U1RR11 272 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 DPRXA6NFQ7 191 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 GPR171O14626 319 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 DNAJA2O60884 412 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 TP53P04637 393 aaPredicted RBP13.04□□□□□ -0.32
VPS28-215ENST00000531924 GUSBP08236 651 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 SOD3P08294 240 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 UQCRBP14927 111 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 CCNA2P20248 432 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 PGM1P36871 562 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 OR2B6P58173 313 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 GNA13Q14344 377 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 MAPK14Q16539 360 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 FAM174BQ3ZCQ3 159 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 SPANXN4Q5MJ08 99 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 TIMM23BQ5SRD1 257 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 TYW3Q6IPR3 259 aaKnown RBP13.04□□□□□ -0.32
VPS28-215ENST00000531924 WDR93Q6P2C0 686 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 GRINAQ7Z429 371 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 LILRB1Q8NHL6 650 aaPredicted RBP13.04□□□□□ -0.32
VPS28-215ENST00000531924 PIGXQ8TBF5 258 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 NEUROG1Q92886 237 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 TESCQ96BS2 214 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 NEURL3Q96EH8 262 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 ZBTB18Q99592 522 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 SSU72Q9NP77 194 aaKnown RBP13.04□□□□□ -0.32
VPS28-215ENST00000531924 CTPS2Q9NRF8 586 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 CISD1Q9NZ45 108 aaKnown RBP13.04□□□□□ -0.32
VPS28-215ENST00000531924 ING1Q9UK53 422 aaPredicted RBP13.04□□□□□ -0.32
VPS28-215ENST00000531924 POU2F3Q9UKI9 436 aa13.04□□□□□ -0.32
VPS28-215ENST00000531924 MAGED1Q9Y5V3 778 aaPredicted RBP13.04□□□□□ -0.32
VPS28-215ENST00000531924 RNF223E7ERA6 249 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 E9PBE3 544 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 MRPL33O75394 65 aaKnown RBP13.03□□□□□ -0.32
VPS28-215ENST00000531924 IGHV3-9P01782 118 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 BGNP21810 368 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 IGHV1-2P23083 117 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 CDKN1AP38936 164 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 MAGEA8P43361 318 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 HTR3AP46098 478 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 IDH2P48735 452 aaKnown RBP13.03□□□□□ -0.32
VPS28-215ENST00000531924 CLK1P49759 484 aaKnown RBP13.03□□□□□ -0.32
VPS28-215ENST00000531924 CDH11P55287 796 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 NME5P56597 212 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 KCNJ10P78508 379 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 PDK3Q15120 406 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 FBXW9Q5XUX1 488 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 SAXO2Q658L1 398 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 KLHL17Q6TDP4 642 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 HMGN2P46Q86SG4 172 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 ATG4DQ86TL0 474 aaPredicted RBP13.03□□□□□ -0.32
VPS28-215ENST00000531924 DEPDC4Q8N2C3 294 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 DNAJA3Q96EY1 480 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 RADILQ96JH8 1075 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 PANX1Q96RD7 426 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 CCDC106Q9BWC9 280 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 BARX1Q9HBU1 254 aaPredicted RBP13.03□□□□□ -0.32
VPS28-215ENST00000531924 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms