RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CLDN22Q8N7P3 220 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 FAM46AQ96IP4 442 aaKnown RBP19.34■□□□□ 0.69
VPS28-212ENST00000530836 SECISBP2Q96T21 854 aaKnown RBP19.34■□□□□ 0.69
VPS28-212ENST00000530836 MRPS26Q9BYN8 205 aaKnown RBP19.34■□□□□ 0.69
VPS28-212ENST00000530836 FBXL4Q9UKA2 621 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 ICAM5Q9UMF0 924 aa19.34■□□□□ 0.69
VPS28-212ENST00000530836 TRIM64A6NGJ6 449 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 ZNF354AO60765 605 aaPredicted RBP19.33■□□□□ 0.69
VPS28-212ENST00000530836 IGF2P01344 180 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 CCDC159P0C7I6 412 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 POU1F1P28069 291 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 SLC1A3P43003 542 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 CDK5R2Q13319 367 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 WDR88Q6ZMY6 472 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 TMPRSS11FQ6ZWK6 438 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 ZNF563Q8TA94 476 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 OSTF1Q92882 214 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 C3orf49Q96BT1 292 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 ARSGQ96EG1 525 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 NODALQ96S42 347 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 IMPAD1Q9NX62 359 aa19.33■□□□□ 0.69
VPS28-212ENST00000530836 SCO2O43819 266 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 ITGB2P05107 769 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 SERPINA7P05543 415 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 MSX1P28360 303 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 LSM11P83369 360 aaKnown RBP eCLIP19.33■□□□□ 0.68
VPS28-212ENST00000530836 SNTA1Q13424 505 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 MAD2L1BPQ15013 274 aaPredicted RBP19.33■□□□□ 0.68
VPS28-212ENST00000530836 MEP1AQ16819 746 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 ZNF791Q3KP31 576 aaPredicted RBP19.33■□□□□ 0.68
VPS28-212ENST00000530836 SLX4IPQ5VYV7 408 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 RPL13AP3Q6NVV1 102 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 TMEM81Q6P7N7 255 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 RPS19BP1Q86WX3 136 aaKnown RBP19.33■□□□□ 0.68
VPS28-212ENST00000530836 AMER2Q8N7J2 671 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 TSPAN14Q8NG11 270 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 B4GALNT2Q8NHY0 566 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 FAM81AQ8TBF8 368 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 TEX47Q8TBZ9 253 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 TRUB1Q8WWH5 349 aaKnown RBP19.33■□□□□ 0.68
VPS28-212ENST00000530836 ZNF566Q969W8 418 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 BPIFA2Q96DR5 249 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 GPA33Q99795 319 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 RTN4RQ9BZR6 473 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 TUBA8Q9NY65 449 aaPredicted RBP19.33■□□□□ 0.68
VPS28-212ENST00000530836 CNIH4Q9P003 139 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 PCDHGB6Q9Y5F9 930 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 KCNMB2Q9Y691 235 aa19.33■□□□□ 0.68
VPS28-212ENST00000530836 ITPR1Q14643 2758 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 OIP5O43482 229 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 CDC40O60508 579 aaKnown RBP eCLIP19.32■□□□□ 0.68
VPS28-212ENST00000530836 TP53P04637 393 aaPredicted RBP19.32■□□□□ 0.68
VPS28-212ENST00000530836 IFI30P13284 250 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 SSR4P51571 173 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 MLF1P58340 268 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 JMJD6Q6NYC1 403 aaPredicted RBP19.32■□□□□ 0.68
VPS28-212ENST00000530836 OR5M3Q8NGP4 307 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 SH3YL1Q96HL8 342 aaPredicted RBP19.32■□□□□ 0.68
VPS28-212ENST00000530836 FER1L6-AS2Q96M78 137 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 TEX12Q9BXU0 123 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 PRRG3Q9BZD7 231 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 ADAM19Q9H013 955 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 ADNPQ9H2P0 1102 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 IL20Q9NYY1 176 aa19.32■□□□□ 0.68
VPS28-212ENST00000530836 A0A087WXM4 84 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 ELOA3DA6NLF2 546 aaPredicted RBP19.31■□□□□ 0.68
VPS28-212ENST00000530836 SOX14O95416 240 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 ELK4P28324 431 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 SMSP52788 366 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 TUBA4AP68366 448 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 TBR1Q16650 682 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 CTU2Q2VPK5 515 aaKnown RBP19.31■□□□□ 0.68
VPS28-212ENST00000530836 ELOA3BQ3SY89 546 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 DCAF10Q5QP82 559 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 H3F3CQ6NXT2 135 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 BORAQ6PGQ7 559 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 CASP12Q6UXS9 341 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 ATG4DQ86TL0 474 aaPredicted RBP19.31■□□□□ 0.68
VPS28-212ENST00000530836 CCDC71Q8IV32 467 aaPredicted RBP19.31■□□□□ 0.68
VPS28-212ENST00000530836 ENTHD1Q8IYW4 607 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 SLC43A2Q8N370 569 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 ELOA3Q8NG57 546 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 RHOXF1Q8NHV9 184 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 DUSP19Q8WTR2 217 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 ASB15Q8WXK1 588 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 TMEM43Q9BTV4 400 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 CDCP1Q9H5V8 836 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 METTL7AQ9H8H3 244 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 SLC25A19Q9HC21 320 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 KLRF1Q9NZS2 232 aa19.31■□□□□ 0.68
VPS28-212ENST00000530836 UNC119BA6NIH7 251 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 ARGFXA6NJG6 315 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 EIF4E1BA6NMX2 242 aaKnown RBP19.3■□□□□ 0.68
VPS28-212ENST00000530836 PIP5K1CO60331 668 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 CLPTM1O96005 669 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 CELA2AP08217 269 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 GPR4P46093 362 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 GIPRP48546 466 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 RRADP55042 308 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 GABARAPL2P60520 117 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms