RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FLVCR1Q9Y5Y0 555 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 DYNC1LI1Q9Y6G9 523 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 FGD5Q6ZNL6 1462 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 FHOD3Q2V2M9 1422 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 KIF21AQ7Z4S6 1674 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 RTL9Q8NET4 1388 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 MROH7-TTC4A0A0A0MT08 1334 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 CDHR2Q9BYE9 1310 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PCDH11XQ9BZA7 1347 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 RB1CC1Q8TDY2 1594 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 LOC100506127A0A0U1RQW1 187 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TTC26A0AVF1 554 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 XKRY2A2RUG3 117 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FUOMA2VDF0 154 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MFSD2BA6NFX1 497 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 C2orf74A8MZ97 194 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 AIM2O14862 343 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CLDN3O15551 220 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NUDT21O43809 227 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 CACNG3O60359 315 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FMO6PO60774 539 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PEX11AO75192 247 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CRCPO75575 148 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SURF6O75683 361 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 SEMA3DO95025 777 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GNA14O95837 355 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FAM107AO95990 144 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DHFRP00374 187 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GOT2P00505 430 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 APOC1P02654 83 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CSF2P04141 144 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 IFNA16P05015 189 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FGF4P08620 206 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CCDC192P0DO97 292 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GFAPP14136 432 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GNSP15586 552 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 UGT1A6P19224 532 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZP3P21754 424 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 F8A1P23610 371 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MAT2AP31153 395 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 SPAM1P38567 509 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 OR1G1P47890 313 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GBX2P52951 348 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 NLRP11P59045 1033 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 STARD6P59095 220 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GPX6P59796 221 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 EIF3EP60228 445 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 YWHAEP62258 255 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 RPL10AP62906 217 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 ELF3P78545 371 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 FOLH1Q04609 750 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 STX3Q13277 289 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PMS2P3Q13401 168 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NAB1Q13506 487 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GPR50Q13585 617 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DDX39BQ13838 428 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 PTK6Q13882 451 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CHRNA6Q15825 494 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SGCAQ16586 387 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MAPK6Q16659 721 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZNF674Q2M3X9 581 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 HSP90AA4PQ58FG1 418 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ANKRD20A8PQ5CZ79 823 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TMEM31Q5JXX7 168 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 BRMS1LQ5PSV4 323 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 C1orf185Q5T7R7 199 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 HES5Q5TA89 166 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 LYPLAL1Q5VWZ2 237 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FAM219BQ5XKK7 198 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 KCTD16Q68DU8 428 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SPOPLQ6IQ16 392 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZSCAN25Q6NSZ9 544 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NIPAL1Q6NVV3 410 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 C3orf33Q6P1S2 294 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DEGS2Q6QHC5 323 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 METAP1DQ6UB28 335 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 PET117Q6UWS5 81 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TOM1L2Q6ZVM7 507 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FRA10AC1Q70Z53 315 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MOB1BQ7L9L4 216 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 HDDC2Q7Z4H3 204 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CDR2LQ86X02 465 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 ELMOD2Q8IZ81 293 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CSGALNACT2Q8N6G5 542 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GVQW1Q8N7I0 195 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FAM133AQ8N9E0 248 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 TRPV3Q8NET8 790 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 OR9A1PQ8NGU1 263 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 URGCPQ8TCY9 931 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PYROXD1Q8WU10 500 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PDCD6IPQ8WUM4 868 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 PTP4A1Q93096 173 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 BSCL2Q96G97 398 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 PDXPQ96GD0 296 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TRNT1Q96Q11 434 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 CYTH2Q99418 400 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ATP6V0BQ99437 205 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 KCNS3Q9BQ31 491 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 C19orf43Q9BQ61 176 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms