RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 BCKDHAP12694 445 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 CCT3P49368 545 aaKnown RBP12.89□□□□□ -0.35
TRAF4-212ENST00000498540 SESN3P58005 492 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 SLC25A3Q00325 362 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 MERTKQ12866 999 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 GABRA6Q16445 453 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 SYT14P1Q58G82 188 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 LIPMQ5VYY2 423 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 R3HCC1LQ7Z5L2 792 aaKnown RBP12.89□□□□□ -0.35
TRAF4-212ENST00000498540 LSRQ86X29 649 aaPredicted RBP12.89□□□□□ -0.35
TRAF4-212ENST00000498540 DEPDC4Q8N2C3 294 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 OR56A1Q8NGH5 318 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 DNAJA3Q96EY1 480 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 THUMPD3Q9BV44 507 aaKnown RBP12.89□□□□□ -0.35
TRAF4-212ENST00000498540 C12orf65Q9H3J6 166 aaKnown RBP12.89□□□□□ -0.35
TRAF4-212ENST00000498540 ASB6Q9NWX5 421 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 TAS2R16Q9NYV7 291 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 PSMC3IPQ9P2W1 217 aaPredicted RBP12.89□□□□□ -0.35
TRAF4-212ENST00000498540 MALT1Q9UDY8 824 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 ATP6V1HQ9UI12 483 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 KCNE5Q9UJ90 142 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 FAF1Q9UNN5 650 aaPredicted RBP12.89□□□□□ -0.35
TRAF4-212ENST00000498540 SERINC4A6NH21 518 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 AZIN1O14977 448 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 RIPK2O43353 540 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 PLIN3O60664 434 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 DNAJA2O60884 412 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 CYP7B1O75881 506 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 HPCAL1P37235 193 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 NR4A2P43354 598 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 ASMTP46597 345 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 CSNK2A1P68400 391 aaPredicted RBP12.88□□□□□ -0.35
TRAF4-212ENST00000498540 CHRNB3Q05901 458 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 PDK3Q15120 406 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 C9orf135Q5VTT2 229 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 RNF165Q6ZSG1 346 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 OLIG3Q7RTU3 272 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 MTDHQ86UE4 582 aaKnown RBP12.88□□□□□ -0.35
TRAF4-212ENST00000498540 WDR31Q8NA23 367 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 OR52E4Q8NGH9 312 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 OR5D16Q8NGK9 328 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 PSMA8Q8TAA3 256 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 ST8SIA1Q92185 356 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 ARL8AQ96BM9 186 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 C3orf49Q96BT1 292 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 MUS81Q96NY9 551 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 SORCS2Q96PQ0 1159 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 OR7D2Q96RA2 312 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 LAT2Q9GZY6 243 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 OXSMQ9NWU1 459 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 GIMAP2Q9UG22 337 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 TMED5Q9Y3A6 229 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 DNAJC15Q9Y5T4 150 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 PMF1-BGLAPU3KQ54 211 aa12.88□□□□□ -0.35
TRAF4-212ENST00000498540 IGHV4-61A0A0C4DH41 118 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 ATP6V1G2-DDX39BF2Z307 99 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 PDLIM1O00151 329 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 C6orf47O95873 294 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 KRT16P08779 473 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 UBTFL6P0CB48 400 aaPredicted RBP12.87□□□□□ -0.35
TRAF4-212ENST00000498540 BMP4P12644 408 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 APEHP13798 732 aaKnown RBP12.87□□□□□ -0.35
TRAF4-212ENST00000498540 APOBEC3AP31941 199 aaPredicted RBP12.87□□□□□ -0.35
TRAF4-212ENST00000498540 PDLIM4P50479 330 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 RPS26P62854 115 aaKnown RBP12.87□□□□□ -0.35
TRAF4-212ENST00000498540 PHC1P78364 1004 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 MST1LQ2TV78 715 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 SPDYE7PQ495Y7 208 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 KANK2Q63ZY3 851 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 OR7E24Q6IFN5 339 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 OR5AK3PQ8NH89 298 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 OR5P2Q8WZ92 322 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 ARL5BQ96KC2 179 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 SDF2Q99470 211 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 PIMREGQ9BSJ6 248 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 NMUR2Q9GZQ4 415 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 SERHL2Q9H4I8 314 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 FKRPQ9H9S5 495 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 SERINC1Q9NRX5 453 aa12.87□□□□□ -0.35
TRAF4-212ENST00000498540 TMEM233B4DJY2 109 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 FCMRO60667 390 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 MRPL33O75394 65 aaKnown RBP12.86□□□□□ -0.35
TRAF4-212ENST00000498540 URI1O94763 535 aaPredicted RBP12.86□□□□□ -0.35
TRAF4-212ENST00000498540 CSTAP01040 98 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 TFPIP10646 304 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 CPA3P15088 417 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 HNF1AP20823 631 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 SLC16A1P53985 500 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 PTGR1Q14914 329 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 GPR68Q15743 365 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 ZNF141Q15928 474 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 WHAMMP3Q1A5X7 153 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 SWI5Q1ZZU3 235 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 CCDC153Q494R4 210 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 TRMT10CQ7L0Y3 403 aaKnown RBP12.86□□□□□ -0.35
TRAF4-212ENST00000498540 CCDC103Q8IW40 242 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 DDIASQ8IXT1 998 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 PIGXQ8TBF5 258 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 SFXN5Q8TD22 340 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 SLC25A43Q8WUT9 341 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms