RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 PTNP21246 168 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 CXCR1P25024 350 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 SFTPDP35247 375 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 APOBEC1P41238 236 aaKnown RBP10.74□□□□□ -0.69
CUX1-210ENST00000497815 HTR3AP46098 478 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 POLR2HP52434 150 aaKnown RBP10.74□□□□□ -0.69
CUX1-210ENST00000497815 CDH12P55289 794 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 CLDN20P56880 219 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 TAS2R41P59536 307 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 KCNC4Q03721 635 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 RBPJQ06330 500 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 SLC25A53Q5H9E4 307 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 MTX3Q5HYI7 312 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 C1orf146Q5VVC0 180 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 TSPYL5Q86VY4 417 aaPredicted RBP10.74□□□□□ -0.69
CUX1-210ENST00000497815 SPATA24Q86W54 205 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 CHERPQ8IWX8 916 aaKnown RBP10.74□□□□□ -0.69
CUX1-210ENST00000497815 LILRA2Q8N149 483 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 C3orf49Q96BT1 292 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 SARAFQ96BY9 339 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 DNAJA3Q96EY1 480 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 SLC47A1Q96FL8 570 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 SERINC1Q9NRX5 453 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 PNPLA3Q9NST1 481 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 SELENONQ9NZV5 590 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 OSGIN1Q9UJX0 560 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 CAMK2AQ9UQM7 478 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 TMED7Q9Y3B3 224 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 BSNQ9UPA5 3926 aa10.74□□□□□ -0.69
CUX1-210ENST00000497815 ZFYVE26Q68DK2 2539 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 TMEM72A0PK05 275 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 OR14I1A6ND48 311 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ELOA3DA6NLF2 546 aaPredicted RBP10.73□□□□□ -0.69
CUX1-210ENST00000497815 H0Y3Z8 333 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 H0YC42 278 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 PYCARD-AS1I3L0S3 204 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 LINC01387J3KSC0 135 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 J3KTA2 159 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ETV2O00321 342 aaPredicted RBP10.73□□□□□ -0.69
CUX1-210ENST00000497815 EIF1AYO14602 144 aaKnown RBP10.73□□□□□ -0.69
CUX1-210ENST00000497815 FMO6PO60774 539 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 SLC19A2O60779 497 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 SEMA7AO75326 666 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 DIRAS1O95057 198 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 MT-ND1P03886 318 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 TFPIP10646 304 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ELK4P28324 431 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ADH6P28332 368 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 SHC1P29353 583 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 LHX2P50458 406 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 SUCLG1P53597 346 aaKnown RBP10.73□□□□□ -0.69
CUX1-210ENST00000497815 TPD52P55327 224 aaPredicted RBP10.73□□□□□ -0.69
CUX1-210ENST00000497815 SELENBP1Q13228 472 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 PIN1Q13526 163 aaPredicted RBP10.73□□□□□ -0.69
CUX1-210ENST00000497815 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.73□□□□□ -0.691e-7■■■■■ 31.5
CUX1-210ENST00000497815 ELOA3BQ3SY89 546 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 NHSL2Q5HYW2 709 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ALG10BQ5I7T1 473 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 WLSQ5T9L3 541 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ZNF585AQ6P3V2 769 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ULK3Q6PHR2 472 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 C3P1Q6ZMU1 363 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 CD163Q86VB7 1156 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ATCAYQ86WG3 371 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ADGRG3Q86Y34 549 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 LSMEM1Q8N8F7 131 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ELOA3Q8NG57 546 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ADAMTS16Q8TE57 1224 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 WDYHV1Q96HA8 205 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 OR11A1Q9GZK7 315 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 ADAM19Q9H013 955 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 RHCGQ9UBD6 479 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 CHRNA9Q9UGM1 479 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 SLC7A7Q9UM01 511 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 OSGIN2Q9Y236 505 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 AP4B1Q9Y6B7 739 aa10.73□□□□□ -0.69
CUX1-210ENST00000497815 SPENQ96T58 3664 aaKnown RBP10.73□□□□□ -0.69
CUX1-210ENST00000497815 A0A0B4J2E0 115 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 A0A1B0GX12 115 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 TRAPPC13A5PLN9 417 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 ANKRD65E5RJM6 399 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 PRRG2O14669 202 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 TNFSF11O14788 317 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 BCKDKO14874 412 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 THY1P04216 161 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 SEMG1P04279 462 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 ZNF708P17019 499 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 GNLYP22749 145 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 SLC7A1P30825 629 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 UQCRFS1P47985 274 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 DLX5P56178 289 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 CLDN18P56856 261 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 RAC1P63000 192 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 VLDLRP98155 873 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 TMEM176BQ3YBM2 270 aaPredicted RBP10.72□□□□□ -0.69
CUX1-210ENST00000497815 GXYLT1Q4G148 440 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 PPP4R4Q6NUP7 873 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 C3orf33Q6P1S2 294 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 ZNF613Q6PF04 617 aa10.72□□□□□ -0.69
CUX1-210ENST00000497815 GDF7Q7Z4P5 450 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms