RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PFN4Q8NHR9 129 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 THAP3Q8WTV1 239 aaPredicted RBP12.97□□□□□ -0.33
CUX1-209ENST00000487284 DNAJA4Q8WW22 397 aaPredicted RBP12.97□□□□□ -0.33
CUX1-209ENST00000487284 TUBA1CQ9BQE3 449 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 RHNO1Q9BSD3 238 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 POLDIP3Q9BY77 421 aaKnown RBP12.97□□□□□ -0.33
CUX1-209ENST00000487284 LIN28AQ9H9Z2 209 aaKnown RBP12.97□□□□□ -0.33
CUX1-209ENST00000487284 MMP25Q9NPA2 562 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 MEPEQ9NQ76 525 aaPredicted RBP12.97□□□□□ -0.33
CUX1-209ENST00000487284 ERVK-18Q9QC07 812 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 RPS6KB2Q9UBS0 482 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 PSORS1C1Q9UIG5 152 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 CDH10Q9Y6N8 788 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 CHD8Q9HCK8 2581 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 DMXL2Q8TDJ6 3036 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 TMEM200CA6NKL6 621 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 CDC42EP2O14613 210 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 KLK10O43240 276 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 RGS10O43665 173 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 FADS1O60427 444 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 PPM1BO75688 479 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 IFI30P13284 250 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 ENDOUP21128 410 aaKnown RBP12.96□□□□□ -0.33
CUX1-209ENST00000487284 TTKP33981 857 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 NRG3P56975 720 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 Q0VFX4 171 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 PMS2P3Q13401 168 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 NEDD8Q15843 81 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 SLC27A4Q6P1M0 643 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 C16orf47Q6ZP98 133 aaPredicted RBP12.96□□□□□ -0.33
CUX1-209ENST00000487284 GPR141Q7Z602 305 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 CADM2Q8N3J6 435 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 ZNF540Q8NDQ6 660 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 RNF217Q8TC41 542 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 M1APQ8TC57 530 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 OSTF1Q92882 214 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 DGCR14Q96DF8 476 aaKnown RBP12.96□□□□□ -0.33
CUX1-209ENST00000487284 IP6K3Q96PC2 410 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 CCNL2Q96S94 520 aaPredicted RBP12.96□□□□□ -0.33
CUX1-209ENST00000487284 DEFB126Q9BYW3 111 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 LAT2Q9GZY6 243 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 CCDC86Q9H6F5 360 aaKnown RBP12.96□□□□□ -0.33
CUX1-209ENST00000487284 C20orf141Q9NUB4 165 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 CLN6Q9NWW5 311 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 NPFFR2Q9Y5X5 522 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 CEPT1Q9Y6K0 416 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 CFAP47Q6ZTR5 3102 aa12.96□□□□□ -0.33
CUX1-209ENST00000487284 EML6Q6ZMW3 1958 aa12.96□□□□□ -0.34
CUX1-209ENST00000487284 MED13Q9UHV7 2174 aa12.96□□□□□ -0.34
CUX1-209ENST00000487284 UNC119BA6NIH7 251 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 GTPBP1O00178 669 aaKnown RBP12.95□□□□□ -0.34
CUX1-209ENST00000487284 ZFAND5O76080 213 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 NADKO95544 446 aaPredicted RBP12.95□□□□□ -0.34
CUX1-209ENST00000487284 PRKAR1AP10644 381 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 NAGAP17050 411 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 MAKP20794 623 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 PTNP21246 168 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 PCMT1P22061 227 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 PCYT1AP49585 367 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 COPZ1P61923 177 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 EFNB1P98172 346 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 EFR3AQ14156 821 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 RAB39AQ14964 217 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 SLC25A30Q5SVS4 291 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 GTF2IRD2BQ6EKJ0 949 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 WBP2NLQ6ICG8 309 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 ACSM5Q6NUN0 579 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 CBLN3Q6UW01 205 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 AHSA2Q719I0 299 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 PRSS48Q7RTY5 328 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 GTF2IRD2Q86UP8 949 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 OR5L2Q8NGL0 311 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 BRIX1Q8TDN6 353 aaKnown RBP12.95□□□□□ -0.34
CUX1-209ENST00000487284 C3orf49Q96BT1 292 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 BPIFA2Q96DR5 249 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 DPH1Q9BZG8 443 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 RTN4RQ9BZR6 473 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 ATP13A2Q9NQ11 1180 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 TBC1D23Q9NUY8 699 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 SELENONQ9NZV5 590 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 DKK4Q9UBT3 224 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 ICAM5Q9UMF0 924 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 CARD8Q9Y2G2 431 aa12.95□□□□□ -0.34
CUX1-209ENST00000487284 A0A087WUJ7 227 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 CLCA1A8K7I4 914 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 ADAM10O14672 748 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 EIF4E2O60573 245 aaKnown RBP12.94□□□□□ -0.34
CUX1-209ENST00000487284 MT-ND2P03891 347 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 SLC6A8P48029 635 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 NUDT6P53370 316 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 ZNF117Q03924 483 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 OCLNQ16625 522 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 DCAF10Q5QP82 559 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 RPL13AP3Q6NVV1 102 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 CDK20Q8IZL9 346 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 SVOPQ8N4V2 548 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 FAM26EQ8N5C1 309 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 TCEANCQ8N8B7 351 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 MUL1Q969V5 352 aa12.94□□□□□ -0.34
CUX1-209ENST00000487284 Q96MT0 163 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms