RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ZNF33AQ06730 810 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 KLF5Q13887 457 aaPredicted RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 CCDC6Q16204 474 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 LRIT3Q3SXY7 679 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 DDI2Q5TDH0 399 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 DUPD1Q68J44 220 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 NCBP2-AS2Q69YL0 99 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 NEPROQ6NW34 567 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 STEAP1BQ6NZ63 245 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 FBXL22Q6P050 247 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 LRRC31Q6UY01 552 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 TMEM184AQ6ZMB5 413 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ZER1Q7Z7L7 766 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 NR2C2APQ86WQ0 139 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 LRRC49Q8IUZ0 686 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 OR4N5Q8IXE1 308 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 IFT20Q8IY31 132 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ZNF683Q8IZ20 524 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 UMODL1-AS1Q8N2C9 162 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ALLCQ8N6M5 410 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 RDH11Q8TC12 318 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 MRGPRDQ8TDS7 321 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 CHPT1Q8WUD6 406 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ANKRD7Q92527 254 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ZNF707Q96C28 371 aaPredicted RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 GMPPAQ96IJ6 420 aaPredicted RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 CYP2S1Q96SQ9 504 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 TMEM121Q9BTD3 319 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 DCTN5Q9BTE1 182 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 NDUFAF3Q9BU61 184 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ZYG11BQ9C0D3 744 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 MTHFD2LQ9H903 347 aaPredicted RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 SPHK2Q9NRA0 654 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 FAM114A2Q9NRY5 505 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ETNK2Q9NVF9 386 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 NLGN3Q9NZ94 848 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 KLHL8Q9P2G9 620 aaPredicted RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 P2RX2Q9UBL9 471 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 XPO7Q9UIA9 1087 aaKnown RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ERRFI1Q9UJM3 462 aaPredicted RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 STOML2Q9UJZ1 356 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 NEU3Q9UQ49 428 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 MRPS28Q9Y2Q9 187 aaKnown RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 KLHDC2Q9Y2U9 406 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 UTP11Q9Y3A2 253 aaKnown RBP3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ZNF175Q9Y473 711 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 HEY1Q9Y5J3 304 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 SNX10Q9Y5X0 201 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 ANAPC1Q9H1A4 1944 aa3.42□□□□□ -1.86
PTCD3-216ENST00000487043 DENND4CQ5VZ89 1909 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CHD9Q3L8U1 2897 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 TRAV19A0A0A6YYK7 116 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 A0A1B0GWJ7 208 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 LOC390937A0A1W2PQ73 354 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ZSCAN5CA6NGD5 496 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 MEI4A8MW99 385 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 NEDD8-MDP1E9PL57 170 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 F5H5T6 163 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 H7C0C1 242 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 SGK1O00141 431 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 INPP4BO15327 924 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 TLX2O43763 284 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ERLIN1O75477 346 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CLDN11O75508 207 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 NXPH2O95156 264 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 FCER2P06734 321 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 PRG2P13727 222 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 GP9P14770 177 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 TSPAN8P19075 237 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 TNNI3P19429 210 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CCNCP24863 283 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 IVDP26440 423 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 RPL22P35268 128 aaKnown RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CCR2P41597 374 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ATP5OP48047 213 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 NDST2P52849 883 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CDH4P55283 916 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 VSNL1P62760 191 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CBX1P83916 185 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CAV1Q03135 178 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 PPIDQ08752 370 aaKnown RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CUL1Q13616 776 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 PPP1R7Q15435 360 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ZKSCAN8Q15776 578 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 HLA-BQ31612 363 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 TCHHL1Q5QJ38 904 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 RABGAP1LQ5R372 815 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 C1orf189Q5VU69 101 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 RWDD4Q6NW29 188 aaKnown RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 C4orf22Q6V702 233 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 DPY19L2P2Q6ZN68 376 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 LCA5Q86VQ0 697 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CATSPERDQ86XM0 798 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CDKL3Q8IVW4 592 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-216ENST00000487043 CMTM8Q8IZV2 173 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 BBOF1Q8ND07 529 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 ICA1LQ8NDH6 482 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 DDHD1Q8NEL9 900 aa3.41□□□□□ -1.86
PTCD3-216ENST00000487043 VN1R2Q8NFZ6 395 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms