RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ENTHD1Q8IYW4 607 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 TBC1D21Q8IYX1 336 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 TMEM123Q8N131 208 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 MTURNQ8N3F0 131 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 OR4D5Q8NGN0 318 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 PAQR8Q8TEZ7 354 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 EMG1Q92979 244 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 FGGYQ96C11 551 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 TGM7Q96PF1 710 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF184Q99676 751 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 CRACR2AQ9BSW2 395 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 RNF126Q9BV68 326 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 NMUR2Q9GZQ4 415 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 NAT10Q9H0A0 1025 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 RHBGQ9H310 441 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 NANSQ9NR45 359 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 SLC17A5Q9NRA2 495 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 SMPD3Q9NY59 655 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 IL36GQ9NZH8 169 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 TMEM9Q9P0T7 183 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 PIPOXQ9P0Z9 390 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 ONECUT1Q9UBC0 465 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 WARS2Q9UGM6 360 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 TBK1Q9UHD2 729 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 PCSK1NQ9UHG2 260 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 RPH3ALQ9UNE2 315 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 ABCG2Q9UNQ0 655 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 ERVW-1Q9UQF0 538 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 MEMO1Q9Y316 297 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 PTCH1Q13635 1447 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 TNRQ92752 1358 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SMIM28A0A1B0GU29 152 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 LRP5LA4QPB2 252 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 TUBAL3A6NHL2 446 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 ZFP92A6NM28 416 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 GPR89AB7ZAQ6 455 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 TAPBPO15533 448 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 PRKYO43930 277 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SNNO75324 88 aaPredicted RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 LYPLA1O75608 230 aaPredicted RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 RHOBTB1O94844 696 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SEMG1P04279 462 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 GPR89BP0CG08 455 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 GLRA2P23416 452 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 MMP11P24347 488 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 HOXD10P28358 340 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 LAP3P28838 519 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 NMT1P30419 496 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 PRKXP51817 358 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 GBX2P52951 348 aaPredicted RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 STX17P56962 302 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 UBE2HP62256 183 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 MAP2K1Q02750 393 aaPredicted RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SLC25A52Q3SY17 297 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SPATA46Q5T0L3 261 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 TMEM225Q6GV28 225 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 CCDC137Q6PK04 289 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 TFAP2EQ6VUC0 442 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SYT10Q6XYQ8 523 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 LCA5Q86VQ0 697 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 VSTM4Q8IW00 320 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 CLEC4FQ8N1N0 589 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 DHRSXQ8N5I4 330 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 ATP6V0D2Q8N8Y2 350 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 CATSPER1Q8NEC5 780 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 STEAP2Q8NFT2 490 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 OR10H4Q8NGA5 316 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 OR4D9Q8NGE8 314 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF564Q8TBZ8 553 aaPredicted RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SLC5A11Q8WWX8 675 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 PIGCQ92535 297 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 FAM122AQ96E09 287 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 IL4I1Q96RQ9 567 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF670Q9BS34 389 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 NIPSNAP3BQ9BS92 247 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SPATA16Q9BXB7 569 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 SRXN1Q9BYN0 137 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 EHD1Q9H4M9 534 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 PTBP2Q9UKA9 531 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 UBQLN1Q9UMX0 589 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 RASD1Q9Y272 281 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 PLLPQ9Y342 182 aa2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 AK6Q9Y3D8 172 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 DDX49Q9Y6V7 483 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-212ENST00000474059 ATP10AO60312 1499 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 PNPLA6Q8IY17 1366 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 CLSPNQ9HAW4 1339 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 IGHV1OR15-1A0A075B7D0 117 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 C15orf38-AP3S2A0A0A6YYH1 394 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 VSTM2BA6NLU5 285 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 E7ESA3 106 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 K7N7A8 449 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 HCN1O60741 890 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 TBL1XO60907 577 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 N4BP1O75113 896 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 MTX2O75431 263 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 SLITRK3O94933 977 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 LALBAP00709 142 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 PNMTP11086 282 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 NR2C1P13056 603 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms