RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 EMC3Q9P0I2 261 aa17.5■□□□□ 0.39
COL9A3-210ENST00000472880 SLC35A3Q9Y2D2 325 aa17.5■□□□□ 0.39
COL9A3-210ENST00000472880 RAP2CQ9Y3L5 183 aa17.5■□□□□ 0.39
COL9A3-210ENST00000472880 BIRC5O15392 142 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 CPSF4O95639 269 aaKnown RBP17.49■□□□□ 0.39
COL9A3-210ENST00000472880 SOD3P08294 240 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 TFPIP10646 304 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 HPCAP84074 193 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 TNK1Q13470 666 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 PPA1Q15181 289 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 CLEC12BQ2HXU8 276 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 ABLIM2Q6H8Q1 611 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 TYW3Q6IPR3 259 aaKnown RBP17.49■□□□□ 0.39
COL9A3-210ENST00000472880 SEZ6L2Q6UXD5 910 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 TMPPEQ6ZT21 453 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 KIRREL3Q8IZU9 778 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 FAM71CQ8NEG0 241 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 RAB8BQ92930 207 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 MUCL1Q96DR8 90 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 ZHX1-C8orf76Q96EF9 292 aa17.49■□□□□ 0.39
COL9A3-210ENST00000472880 MAGED1Q9Y5V3 778 aaPredicted RBP17.49■□□□□ 0.39
COL9A3-210ENST00000472880 FREM1Q5H8C1 2179 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 PRR14LQ5THK1 2151 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 PRSS51A0A1B0GVH4 220 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 OVOL3O00110 214 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 ANKRD28O15084 1053 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 SNUPNO95149 360 aaKnown RBP17.48■□□□□ 0.39
COL9A3-210ENST00000472880 GUSBP08236 651 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 DANCRP0C864 163 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 GGT1P19440 569 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 COX5AP20674 150 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 CHI3L1P36222 383 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-210ENST00000472880 PGM1P36871 562 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 APOBEC1P41238 236 aaKnown RBP17.48■□□□□ 0.39
COL9A3-210ENST00000472880 RPL14P50914 215 aaKnown RBP17.48■□□□□ 0.39
COL9A3-210ENST00000472880 CLNS1AP54105 237 aaKnown RBP17.48■□□□□ 0.39
COL9A3-210ENST00000472880 FAPQ12884 760 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 MAPK14Q16539 360 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 DPY19L1Q2PZI1 675 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 CEP85LQ5SZL2 805 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 SSX8Q7RTT4 187 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 TESCQ96BS2 214 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 ROPN1LQ96C74 230 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 CHRNA9Q9UGM1 479 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 LIPT1Q9Y234 373 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-210ENST00000472880 USF3Q68DE3 2245 aa17.48■□□□□ 0.39
COL9A3-210ENST00000472880 DPRXA6NFQ7 191 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 IGHV1-2P23083 117 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 EDNRAP25101 427 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 RYKP34925 604 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 CDKN1AP38936 164 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 SLC1A6P48664 564 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 FUT5Q11128 374 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 GPAT3Q53EU6 434 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 SPANXN4Q5MJ08 99 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 TIMM23BQ5SRD1 257 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 SAXO2Q658L1 398 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 FRRS1Q6ZNA5 592 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 GRINAQ7Z429 371 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 MTDHQ86UE4 582 aaKnown RBP17.47■□□□□ 0.39
COL9A3-210ENST00000472880 PRIMA1Q86XR5 153 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 UBE2J2Q8N2K1 259 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 ZNF75CPQ92670 426 aaPredicted RBP17.47■□□□□ 0.39
COL9A3-210ENST00000472880 NEURL3Q96EH8 262 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 SLC35A5Q9BS91 424 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 CCDC106Q9BWC9 280 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 TRIM2Q9C040 744 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 ALG2Q9H553 416 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 SSU72Q9NP77 194 aaKnown RBP17.47■□□□□ 0.39
COL9A3-210ENST00000472880 CTPS2Q9NRF8 586 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 FAIMQ9NVQ4 179 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 MARCOQ9UEW3 520 aaPredicted RBP17.47■□□□□ 0.39
COL9A3-210ENST00000472880 HIVEP2P31629 2446 aa17.47■□□□□ 0.39
COL9A3-210ENST00000472880 E9PBE3 544 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 TM9SF1O15321 606 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 SCN2BO60939 215 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 BCAS1O75363 584 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-210ENST00000472880 LBPP18428 481 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 IDUAP35475 653 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 CDH11P55287 796 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 PDK3Q15120 406 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 TNFAIP8L3Q5GJ75 292 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 P2RY8Q86VZ1 359 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 LRRC34Q8IZ02 419 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 ARFGAP2Q8N6H7 521 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 PIGXQ8TBF5 258 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 APH1AQ96BI3 265 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 NUF2Q9BZD4 464 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 C20orf27Q9GZN8 174 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 SAP130Q9H0E3 1048 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 CENPHQ9H3R5 247 aa17.46■□□□□ 0.39
COL9A3-210ENST00000472880 EXOSC3Q9NQT5 275 aaKnown RBP17.46■□□□□ 0.39
COL9A3-210ENST00000472880 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-210ENST00000472880 NOSIPQ9Y314 301 aaKnown RBP17.46■□□□□ 0.39
COL9A3-210ENST00000472880 IGKV3D-15A0A087WSY6 115 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 OR5H1A6NKK0 313 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 RNF223E7ERA6 249 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 ABCD4O14678 606 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 ERLIN1O75477 346 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms