RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	AGAP6	Q5VW22	663 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	FBXW9	Q5XUX1	488 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	TMPPE	Q6ZT21	453 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	SSX8	Q7RTT4	187 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	GALNT5	Q7Z7M9	940 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	CNPY4	Q8N129	248 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	KRTCAP2	Q8N6L1	136 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	WDR31	Q8NA23	367 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	ADAMTS15	Q8TE58	950 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	C10orf105	Q8TEF2	133 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	ST8SIA1	Q92185	356 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	RADIL	Q96JH8	1075 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	OR5B2	Q96R09	309 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	DHRS9	Q9BPW9	319 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	RHNO1	Q9BSD3	238 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	THUMPD3	Q9BV44	507 aa	Known RBP	9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	CCDC106	Q9BWC9	280 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	LAT2	Q9GZY6	243 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	ALG2	Q9H553	416 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	FAIM	Q9NVQ4	179 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	MKS1	Q9NXB0	559 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	CDC42EP3	Q9UKI2	254 aa		9.81	□□□□□ -0.84
PTPN7-204	ENST00000462815	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	9.81	□□□□□ -0.84	3e-6	■■□□□ 11.8
PTPN7-204	ENST00000462815	VWC2L	B2RUY7	222 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815		H3BNH8	94 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	RAD51D	O75771	328 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	IGHV3-9	P01782	118 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	ZNF16	P17020	682 aa	Predicted RBP	9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	THBS2	P35442	1172 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	PGM1	P36871	562 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	CCT5	P48643	541 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	SLC16A1	P53985	500 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	DSCR9	P59020	149 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	RPS26	P62854	115 aa	Known RBP	9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	HBA1	P69905	142 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	H3F3A	P84243	136 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	GABRA6	Q16445	453 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	SYT14P1	Q58G82	188 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	MTDH	Q86UE4	582 aa	Known RBP	9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	C4orf33	Q8N1A6	199 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	MUC15	Q8N387	334 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	OR5AK3P	Q8NH89	298 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	RFWD2	Q8NHY2	731 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	EPS8L3	Q8TE67	593 aa	Known RBP	9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	UBLCP1	Q8WVY7	318 aa	Predicted RBP	9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	ARL5B	Q96KC2	179 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	MUS81	Q96NY9	551 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	ZNF350	Q9GZX5	532 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	MANSC1	Q9H8J5	431 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	ACER3	Q9NUN7	267 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	ARGLU1	Q9NWB6	273 aa	Predicted RBP	9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	ZNF446	Q9NWS9	450 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815	TRAF6	Q9Y4K3	522 aa		9.8	□□□□□ -0.84
PTPN7-204	ENST00000462815		A0A1W2PR80	420 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	GTPBP1	O00178	669 aa	Known RBP	9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	COPE	O14579	308 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	KIAA0513	O60268	411 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	NPHS1	O60500	1241 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	TRIM13	O60858	407 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	PEX11A	O75192	247 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	PMS2P2	O95744	297 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	GUSB	P08236	651 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	KRT16	P08779	473 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	NUDT17	P0C025	328 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	SLC25A16	P16260	332 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	KRT4	P19013	534 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	PTAFR	P25105	342 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	ALDH3A1	P30838	453 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	RPL3	P39023	403 aa	Known RBP	9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	ZNF83	P51522	516 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	CASP9	P55211	416 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	CASP8	Q14790	479 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	MST1L	Q2TV78	715 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	ARHGAP11B	Q3KRB8	267 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	C6orf136	Q5SQH8	315 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	CLEC2A	Q6UVW9	174 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	TMEM108	Q6UXF1	575 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	DDIAS	Q8IXT1	998 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	CLEC4F	Q8N1N0	589 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	PIAS4	Q8N2W9	510 aa	Predicted RBP	9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	TMCO5A	Q8N6Q1	288 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	ARIH2OS	Q8N7S6	290 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	ZNF614	Q8N883	585 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	OR52N5	Q8NH56	324 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	MOAP1	Q96BY2	351 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	MUCL1	Q96DR8	90 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	CHMP6	Q96FZ7	201 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	PPP3R2	Q96LZ3	170 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	ADAD1	Q96M93	576 aa	Known RBP	9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	C1orf50	Q9BV19	199 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	MECR	Q9BV79	373 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	BHLHE41	Q9C0J9	482 aa	Predicted RBP	9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	FAF1	Q9UNN5	650 aa	Predicted RBP	9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	MGAT4B	Q9UQ53	548 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	MEGF8	Q7Z7M0	2845 aa		9.79	□□□□□ -0.84
PTPN7-204	ENST00000462815	PRAMEF27	A3QJZ7	478 aa		9.78	□□□□□ -0.84
PTPN7-204	ENST00000462815	SLC35F4	A4IF30	521 aa		9.78	□□□□□ -0.84
PTPN7-204	ENST00000462815	TMEM114	B3SHH9	223 aa		9.78	□□□□□ -0.84
PTPN7-204	ENST00000462815	SULT2B1	O00204	365 aa		9.78	□□□□□ -0.84
PTPN7-204	ENST00000462815	SCN2B	O60939	215 aa		9.78	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms