RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 UBE2NLQ5JXB2 153 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 FAM122CQ6P4D5 195 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ABHD12BQ7Z5M8 362 aaPredicted RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 OR8J2Q8NGG1 315 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ZFAND1Q8TCF1 268 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 CENPOQ9BU64 300 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 CPEB1Q9BZB8 566 aaKnown RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ACKR4Q9NPB9 350 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 POU2F3Q9UKI9 436 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 USP22Q9UPT9 525 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 PRSS21Q9Y6M0 314 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 KDM3BQ7LBC6 1761 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 A0A0U1RQK1 487 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 TMEM82A0PJX8 343 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 SLC22A23A1A5C7 686 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 OR52A4PA6NMU1 304 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 A8MVJ9 347 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 C17orf105B2RV13 164 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 SLC16A6O15403 523 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 FABP7O15540 132 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 FADS1O60427 444 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 HOXB5P09067 269 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 NFYAP23511 347 aaPredicted RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 APEX1P27695 318 aaKnown RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 GDNFP39905 211 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ETV5P41161 510 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 CTSCP53634 463 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 CLDN6P56747 220 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ERVK-16P61578 105 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 RBM39Q14498 530 aaKnown RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 OR1Q1Q15612 314 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 GGTA1PQ4G0N0 100 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 BEX5Q5H9J7 111 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 CTSL3PQ5NE16 218 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 HENMT1Q5T8I9 393 aaKnown RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 LINC00299Q6ZSB3 139 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF534Q76KX8 674 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 VRK2Q86Y07 508 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 TCEAL8Q8IYN2 117 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 TXNDC15Q96J42 360 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 SLC38A1Q9H2H9 487 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 C1GALT1Q9NS00 363 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 RLIMQ9NVW2 624 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF443Q9Y2A4 671 aaPredicted RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 NME7Q9Y5B8 376 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 PCDHGA6Q9Y5G7 932 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 LTBP3Q9NS15 1303 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 RGPD1P0DJD0 1748 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF705GA8MUZ8 300 aaPredicted RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 RFXAPO00287 272 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ONECUT3O60422 494 aaPredicted RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 MED6O75586 246 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 UBL3O95164 117 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 WDPCPO95876 746 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 GASTP01350 101 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 SERPINA7P05543 415 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 TACR1P25103 407 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 MSX1P28360 303 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 VIPR2P41587 438 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 VEGFCP49767 419 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 RAB5CP51148 216 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 HTD2P86397 168 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 SPOCK1Q08629 439 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 COL9A2Q14055 689 aaPredicted RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 MELKQ14680 651 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 MPP7Q5T2T1 576 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 SYT6Q5T7P8 510 aaPredicted RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 LIPIQ6XZB0 460 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 DPY19L4Q7Z388 723 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 GPR155Q7Z3F1 870 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 PTRH1Q86Y79 214 aaKnown RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 OR51D1Q8NGF3 324 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 OR4D6Q8NGJ1 314 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 PPP1R35Q8TAP8 253 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 NANOS1Q8WY41 292 aaKnown RBP7.28□□□□□ -1.24
NEDD9-204ENST00000448183 C22orf15Q8WYQ4 148 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 SLAMF9Q96A28 289 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF681Q96N22 645 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 CNTNAP3Q9BZ76 1288 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 CHRDQ9H2X0 955 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 PLEK2Q9NYT0 353 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 SLC6A14Q9UN76 642 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 GABRQQ9UN88 632 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 ADAM18Q9Y3Q7 739 aa7.28□□□□□ -1.24
NEDD9-204ENST00000448183 TRBV4-1A0A0J9YWV2 114 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 TMEM269A0A1B0GVZ9 245 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 TGM5O43548 720 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 FBXO24O75426 580 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 NCR1O76036 304 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 ATXN1LP0C7T5 689 aaKnown RBP7.27□□□□□ -1.24
NEDD9-204ENST00000448183 SNRPBP14678 240 aaKnown RBP7.27□□□□□ -1.24
NEDD9-204ENST00000448183 JUNBP17275 347 aaPredicted RBP7.27□□□□□ -1.24
NEDD9-204ENST00000448183 ITGB7P26010 798 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 PKLRP30613 574 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 SFTPDP35247 375 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 ADRA1AP35348 466 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 RPS25P62851 125 aaKnown RBP7.27□□□□□ -1.24
NEDD9-204ENST00000448183 ILKQ13418 452 aa7.27□□□□□ -1.24
NEDD9-204ENST00000448183 MRPL21Q7Z2W9 205 aaKnown RBP7.27□□□□□ -1.24
NEDD9-204ENST00000448183 RNF113BQ8IZP6 322 aaKnown RBP7.27□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms