RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TUBGCP2Q9BSJ2 902 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CHID1Q9BWS9 393 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 GPR174Q9BXC1 333 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 KRTAP2-2Q9BYT5 123 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 OR2B2Q9GZK3 357 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 LAT2Q9GZY6 243 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ALG9Q9H6U8 611 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NMRAL1Q9HBL8 299 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SLC25A19Q9HC21 320 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ZFP57Q9NU63 452 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SIGLEC8Q9NYZ4 499 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 KLRF1Q9NZS2 232 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SLC17A7Q9P2U7 560 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 POLKQ9UBT6 870 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 DCDC2Q9UHG0 476 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 PAIP2BQ9ULR5 123 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 AMDHD2Q9Y303 409 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 WIPI2Q9Y4P8 454 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 GRIN2DO15399 1336 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ANKRD30AQ9BXX3 1397 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 RPAP1Q9BWH6 1393 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 AFF2P51816 1311 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 FRMPD4Q14CM0 1322 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 IGLV5-39A0A0G2JS06 123 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 LOC105371267A0A1B0GV96 52 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 OR6C70A6NIJ9 312 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 A8MVM7 634 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ARHGEF33A8MVX0 844 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SLCO1B7G3V0H7 640 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 GPR171O14626 319 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 COCHO43405 550 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 GMDSO60547 372 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SEMA3DO95025 777 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 LRATO95237 230 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 BRI3O95415 125 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 TFAP2AP05549 437 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 DCNP07585 359 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 UBTFL1P0CB47 393 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MLNP12872 115 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MYOD1P15172 320 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 POLR2EP19388 210 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CA4P22748 312 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 AADACP22760 399 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 EPHA2P29317 976 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 PRDX3P30048 256 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 P2RY2P41231 377 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 BDKRB1P46663 353 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 BRCC3P46736 316 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CDC34P49427 236 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 PGFP49763 221 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 STK19P49842 368 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 LCN2P80188 198 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SLAMF1Q13291 335 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 VGLL4Q14135 290 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SLC15A2Q16348 729 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CDKL4Q5MAI5 379 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 BEND6Q5SZJ8 279 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 BEND3Q5T5X7 828 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 DCAF12Q5T6F0 453 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 C1orf189Q5VU69 101 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ACSM5Q6NUN0 579 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF549Q6P9A3 640 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SLC16A12Q6ZSM3 486 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 Q6ZSV7 163 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SLC26A9Q7LBE3 791 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 FAM122BQ7Z309 247 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SLC26A11Q86WA9 606 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 EID3Q8N140 333 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NEXN-AS1Q8NBZ9 246 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 OR4A4PQ8NGN8 299 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NUBPLQ8TB37 319 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MAGEE2Q8TD90 523 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ING5Q8WYH8 240 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MRPL24Q96A35 216 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CCDC124Q96CT7 223 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 TMA16Q96EY4 203 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 PLEKHA8Q96JA3 519 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CSF3RQ99062 836 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 DRC3Q9H069 523 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NXF5Q9H1B4 397 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NEUROG2Q9H2A3 272 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 OR51V1Q9H2C8 321 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MRPL39Q9NYK5 338 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MSRB1Q9NZV6 116 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 TUBGCP4Q9UGJ1 667 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CUL7Q14999 1698 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ATP10AO60312 1499 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 A0A0G2JNG1 304 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 A0A1W2PQ72 361 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 CENPBD1B2RD01 187 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 RAB29O14966 203 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 IDH3BO43837 385 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 OR10H3O60404 316 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 KHDRBS3O75525 346 aaKnown RBP3.57□□□□□ -1.84
HMGB1-204ENST00000399489 ANXA9O76027 345 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 VAPBO95292 243 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 IGHG3P01860 377 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 P04436 131 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 IL6P05231 212 aa3.57□□□□□ -1.84
HMGB1-204ENST00000399489 UMODP07911 640 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms