RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 FAM199XQ6PEV8 388 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 HSDL2Q6YN16 418 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 FRRS1Q6ZNA5 592 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 LANCL3Q6ZV70 420 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 RAB11FIP2Q7L804 512 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 ZNF615Q8N8J6 731 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 OR4K5Q8NGD3 323 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 OR4D11Q8NGI4 311 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 OR52I1Q8NGK6 324 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 OR52P1PQ8NH57 321 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 C16orf52Q8NHV5 167 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 HOXB13Q92826 284 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 VSTM2LQ96N03 204 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 LRFN5Q96NI6 719 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 ZNF350Q9GZX5 532 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 ISYNA1Q9NPH2 558 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 POLE3Q9NRF9 147 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 KLHL28Q9NXS3 571 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 OR10H1Q9Y4A9 318 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 B3GALT1Q9Y5Z6 326 aa12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 CNOT1A5YKK6 2376 aaKnown RBP12.12□□□□□ -0.47
SQSTM1-201ENST00000360718 IDSB3KWA1 339 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 CDRT1O95170 752 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 CPEP16870 476 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 HTR3AP46098 478 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 EMP2P54851 167 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 PSG6Q00889 435 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 TRIP6Q15654 476 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 GPR68Q15743 365 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 C3orf38Q5JPI3 329 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 CCNJQ5T5M9 372 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 LIPKQ5VXJ0 399 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 TYW3Q6IPR3 259 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 C1orf94Q6P1W5 598 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 ZNF619Q8N2I2 560 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 DEFB124Q8NES8 71 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC2A12Q8TD20 617 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 CAPSLQ8WWF8 208 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC25A46Q96AG3 418 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 ZG16BQ96DA0 208 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC46A1Q96NT5 459 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 ZPBPQ9BS86 351 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 PRRG3Q9BZD7 231 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 OR2B2Q9GZK3 357 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 QRSL1Q9H0R6 528 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC26A1Q9H2B4 701 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 NXT1Q9UKK6 140 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 TBC1D24Q9ULP9 559 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 RBMX2Q9Y388 322 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 V9GYH0 126 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 C9J4A7 227 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 PRKYO43930 277 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 TP53P04637 393 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 JMJD7P0C870 316 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 MMP11P24347 488 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 PRKAR1BP31321 381 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 IFNA8P32881 189 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 CDK5Q00535 292 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 SNAPC1Q16533 368 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 SYT14P1Q58G82 188 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 ENTPD8Q5MY95 495 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 FAAH2Q6GMR7 532 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 FIGNL1Q6PIW4 674 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 XKRXQ6PP77 449 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 ZNF517Q6ZMY9 492 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 SPATC1Q76KD6 591 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 NRARPQ7Z6K4 114 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 ZER1Q7Z7L7 766 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 COMTD1Q86VU5 262 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 AP3S1Q92572 193 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 MR1Q95460 341 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 LIN37Q96GY3 246 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 LRR1Q96L50 414 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 PRRC1Q96M27 445 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 MRPS18AQ9NVS2 196 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 FBXO34Q9NWN3 711 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 TXNL4BQ9NX01 149 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 TESQ9UGI8 421 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 GSTK1Q9Y2Q3 226 aa12.11□□□□□ -0.47
SQSTM1-201ENST00000360718 FREM2Q5SZK8 3169 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 GXYLT2A0PJZ3 443 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 VSTM2BA6NLU5 285 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 M0R3H8 397 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 SYT5O00445 386 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 PRKNO60260 465 aaPredicted RBP12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 ALOX12BO75342 701 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 CYP7B1O75881 506 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 DBIP07108 87 aaKnown RBP12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 CYC1P08574 325 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 IL7P13232 177 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 TRHRP34981 398 aaPredicted RBP12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 RFX3P48380 749 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 WNT4P56705 351 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC37A1P57057 533 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 RAB40BQ12829 278 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 GPR50Q13585 617 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 EIPR1Q53HC9 387 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 GDPD1Q8N9F7 314 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 MORN4Q8NDC4 146 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms