RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 LRRC28Q86X40 367 aaPredicted RBP20.38■□□□□ 0.85
UPF3A-201ENST00000351487 CYB561A3Q8NBI2 242 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 OR5M3Q8NGP4 307 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 DDX28Q9NUL7 540 aaKnown RBP20.38■□□□□ 0.85
UPF3A-201ENST00000351487 FBXL4Q9UKA2 621 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 CACNA1IQ9P0X4 2223 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 TDRD6O60522 2096 aaKnown RBP20.38■□□□□ 0.85
UPF3A-201ENST00000351487 LYRM1O43325 122 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 HLA-DMAP28067 261 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 E2F1Q01094 437 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 GAS6Q14393 721 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 SF3A2Q15428 464 aaKnown RBP20.38■□□□□ 0.85
UPF3A-201ENST00000351487 IDNKQ5T6J7 187 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 ULK3Q6PHR2 472 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 FRMD1Q8N878 549 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 PGLYRP3Q96LB9 341 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 RBCK1Q9BYM8 510 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 CHRNA9Q9UGM1 479 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 BLACEA4D250 179 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 THEGLP0DJG4 465 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 CTSEP14091 401 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 SHC1P29353 583 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 THBS2P35442 1172 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 CRYZQ08257 329 aaKnown RBP20.37■□□□□ 0.85
UPF3A-201ENST00000351487 NDUFA5Q16718 116 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 DMKNQ6E0U4 476 aaPredicted RBP20.37■□□□□ 0.85
UPF3A-201ENST00000351487 FAAH2Q6GMR7 532 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 NPSR1Q6W5P4 371 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 MCATQ8IVS2 390 aaKnown RBP20.37■□□□□ 0.85
UPF3A-201ENST00000351487 CMIPQ8IY22 773 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 UBE2J2Q8N2K1 259 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 SLC44A3Q8N4M1 653 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 AVL9Q8NBF6 648 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 GAS2L1Q99501 681 aaPredicted RBP20.37■□□□□ 0.85
UPF3A-201ENST00000351487 CYSLTR2Q9NS75 346 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 DTX4Q9Y2E6 619 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 A0A0A6YYC8 382 aaPredicted RBP20.37■□□□□ 0.85
UPF3A-201ENST00000351487 CENPXA8MT69 81 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 FAM25AB3EWG3 89 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 FAM25CB3EWG5 89 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 FAM25GB3EWG6 89 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 I3L1I5 382 aaPredicted RBP20.37■□□□□ 0.85
UPF3A-201ENST00000351487 HRO43593 1189 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 FOXS1O43638 330 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 SKP1P63208 163 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 FAM53BQ14153 422 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 C17orf47Q8NEP4 570 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 ZDHHC1Q8WTX9 485 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 RBM18Q96H35 190 aaKnown RBP20.37■□□□□ 0.85
UPF3A-201ENST00000351487 NECTIN4Q96NY8 510 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 TTYH2Q9BSA4 534 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 EXTL2Q9UBQ6 330 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 MRPS33Q9Y291 106 aaKnown RBP20.37■□□□□ 0.85
UPF3A-201ENST00000351487 NOX1Q9Y5S8 564 aa20.37■□□□□ 0.85
UPF3A-201ENST00000351487 FAM172BPA6NC97 362 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 SYNDIG1LA6NDD5 238 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 HRKO00198 91 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 CTNSO60931 367 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 PSMD4P55036 377 aaKnown RBP20.36■□□□□ 0.85
UPF3A-201ENST00000351487 OR12D2P58182 307 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 CSTF1Q05048 431 aaKnown RBP20.36■□□□□ 0.85
UPF3A-201ENST00000351487 KIRREL2Q6UWL6 708 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 ZNF595Q8IYB9 648 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 ABHD4Q8TB40 342 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 PEX11GQ96HA9 241 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 HCN3Q9P1Z3 774 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 CLDN16Q9Y5I7 305 aa20.36■□□□□ 0.85
UPF3A-201ENST00000351487 A8MV72 311 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-201ENST00000351487 J3QLW9 94 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 SRPX2O60687 465 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-201ENST00000351487 PRAMEF2O60811 474 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 NDUFB2O95178 105 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 ZNF19P17023 458 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 LTBRP36941 435 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 ATP12AP54707 1039 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 STX4Q12846 297 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 SFXN4Q6P4A7 337 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 TEX19Q8NA77 164 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 RCBTB1Q8NDN9 531 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 ADAMTS18Q8TE60 1221 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 G6PC3Q9BUM1 346 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 MARCH7Q9H992 704 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 Q9N2J8 555 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 NUFIP1Q9UHK0 495 aaKnown RBP20.35■□□□□ 0.85
UPF3A-201ENST00000351487 A0A0G2JK05 382 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 SHISA7A6NL88 538 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 GYPBP06028 91 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 RCVRNP35243 200 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 GPR3P46089 330 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 GPR143P51810 404 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 SLC3A1Q07837 685 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 C1orf61Q13536 156 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 GGTLC2Q14390 218 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 FAM27D1Q5T7N8 215 aa20.35■□□□□ 0.85
UPF3A-201ENST00000351487 TOE1Q96GM8 510 aaKnown RBP20.35■□□□□ 0.85
UPF3A-201ENST00000351487 ERMAPQ96PL5 475 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-201ENST00000351487 EFCAB7A8K855 629 aa20.34■□□□□ 0.85
UPF3A-201ENST00000351487 TRIM3O75382 744 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-201ENST00000351487 PSKH1P11801 424 aa20.34■□□□□ 0.85
UPF3A-201ENST00000351487 RBMS1P29558 406 aaKnown RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms