RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 NDRG3Q9UGV2 375 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 COPS3Q9UNS2 423 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 LTBQ06643 244 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 LAPTM4AQ15012 233 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 TAF9Q16594 264 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 PDE7BQ9NP56 450 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 NRIP3Q9NQ35 241 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 GPR160Q9UJ42 338 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 COL2A1P02458 1487 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-202ENST00000347401 KNG1P01042 644 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 PRAMEF8Q5VWM4 474 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 PRAMEF7Q5VXH5 474 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF322Q6U7Q0 402 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-202ENST00000347401 CBARPQ8N350 705 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-202ENST00000347401 SH3RF2Q8TEC5 729 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 EXOSC3Q9NQT5 275 aaKnown RBP12.52□□□□□ -0.41
COL6A3-202ENST00000347401 MUTYHQ9UIF7 546 aa12.52□□□□□ -0.41
COL6A3-202ENST00000347401 NPIPA5A0A0B4J1W7 369 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 TRDV1A0A1B0GX56 115 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 GABARAPH6UMI1 98 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 GABARAPO95166 117 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ARRB1P49407 418 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 MGAT3Q09327 533 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 SGCAQ16586 387 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 FAM74A1Q5RGS3 127 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ATPAF1Q5TC12 328 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ISCA2Q86U28 154 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 OR5T1Q8NG75 326 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 FUBP1Q96AE4 644 aaKnown RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 KCNK13Q9HB14 408 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ACSS1Q9NUB1 689 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 NPFFR2Q9Y5X5 522 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 SMIM30A4D0T7 59 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF587BE7ETH6 402 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 FABP1P07148 127 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 CSF2RAP15509 400 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 OPRD1P41143 372 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 NKX3-1Q99801 234 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 NUDT9Q9BW91 350 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 MYOTQ9UBF9 498 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 SLC2A6Q9UGQ3 507 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 PCNX2A6NKB5 2137 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 A0A0G2JLL6 359 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 C11orf98E9PRG8 122 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 CNOT4O95628 575 aaKnown RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 SNRPGP62308 76 aaKnown RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 PRRT2Q7Z6L0 340 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 BAGE3Q86Y29 109 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 BAGE2Q86Y30 109 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 OR10Q1Q8NGQ4 319 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 CLEC4DQ8WXI8 215 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 AQP9O43315 295 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ACPPP15309 386 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 H3F3CQ6NXT2 135 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 TMEM107Q6UX40 140 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 PTRH1Q86Y79 214 aaKnown RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 NETO2Q8NC67 525 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 GPR26Q8NDV2 337 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 COL1A1P02452 1464 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 NUDT21O43809 227 aaKnown RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF8P17098 575 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 DUSP3P51452 185 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 CATR1Q13166 79 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF705AQ6ZN79 300 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 NRMQ8IXM6 262 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 SERINC2Q96SA4 455 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 WDR77Q9BQA1 342 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ENTPD2Q9Y5L3 495 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF407Q9C0G0 2248 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 RTCAO00442 366 aaKnown RBP12.51□□□□□ -0.41
COL6A3-202ENST00000347401 PREPP48147 710 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 TAS1R3Q7RTX0 852 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 COMMD1Q8N668 190 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 CLDN19Q8N6F1 224 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 WDR20Q8TBZ3 569 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 CLEC4CQ8WTT0 213 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 SLC25A46Q96AG3 418 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF586Q9NXT0 402 aa12.51□□□□□ -0.41
COL6A3-202ENST00000347401 B3GALNT1O75752 331 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 CD53P19397 219 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 KCNG3Q8TAE7 436 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 TMEM174Q8WUU8 243 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 APH1BQ8WW43 257 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 STRAPQ9Y3F4 350 aaKnown RBP12.5□□□□□ -0.41
COL6A3-202ENST00000347401 CCNOP22674 350 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 ETV4P43268 484 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 GGTA1PQ4G0N0 100 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 RAB3CQ96E17 227 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 HRASLS5Q96KN8 279 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 ADAM29Q9UKF5 820 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 SEC14L6B5MCN3 397 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 GABRPO00591 440 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 TSFMP43897 325 aaKnown RBP12.5□□□□□ -0.41
COL6A3-202ENST00000347401 GPR17Q13304 367 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 ILKQ13418 452 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 NHLRC2Q8NBF2 726 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 YIPF5Q969M3 257 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF395Q9H8N7 513 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF223Q9UK11 482 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-202ENST00000347401 CTXN1P60606 82 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms