RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CCR4P51679 360 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 SHC2P98077 582 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 STX4Q12846 297 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 PRRT3Q5FWE3 981 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 VASNQ6EMK4 673 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 PRSS41Q7RTY9 318 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 RAB11FIP5Q9BXF6 653 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 CLDND1Q9NY35 253 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 CES1P1Q9UKY3 287 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 PLXNA2O75051 1894 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 GXYLT2A0PJZ3 443 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 SLC22A31A6NKX4 558 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 PRKNO60260 465 aaPredicted RBP11.71□□□□□ -0.53
LIG1-201ENST00000263274 KCNJ13O60928 360 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 TCRBP04435 133 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 CEACAM5P06731 702 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 CTRB1P17538 263 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 AHCYP23526 432 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 PEBP1P30086 187 aaKnown RBP11.71□□□□□ -0.53
LIG1-201ENST00000263274 GJA4P35212 333 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 MTNR1BP49286 362 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 SRSF5Q13243 272 aaKnown RBP11.71□□□□□ -0.53
LIG1-201ENST00000263274 EIPR1Q53HC9 387 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 DCST2Q5T1A1 773 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 AGBL4Q5VU57 503 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 CTRB2Q6GPI1 263 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.71□□□□□ -0.53
LIG1-201ENST00000263274 C7orf61Q8IZ16 206 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 SMARCD2Q92925 531 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 CREB3L1Q96BA8 519 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 KXD1Q9BQD3 176 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 C12orf10Q9HB07 376 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 POLMQ9NP87 494 aaPredicted RBP11.71□□□□□ -0.53
LIG1-201ENST00000263274 TMEM74BQ9NUR3 256 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 RPS6KB2Q9UBS0 482 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 PPIEQ9UNP9 301 aaKnown RBP11.71□□□□□ -0.53
LIG1-201ENST00000263274 LRRK1Q38SD2 2015 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 TRBV2A0A0J9YWF9 115 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 POM121BA6NF01 834 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 RFPL3O75679 317 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 SBK2P0C263 348 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 TFPIP10646 304 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 PTHLHP12272 177 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 ANXA3P12429 323 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 RUNX2Q13950 521 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 MRM1Q6IN84 353 aaKnown RBP11.71□□□□□ -0.53
LIG1-201ENST00000263274 RFLNBQ8N5W9 214 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 LINC00469Q8N7U9 141 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 CNOT9Q92600 299 aaKnown RBP11.71□□□□□ -0.53
LIG1-201ENST00000263274 FGF11Q92914 225 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 ZNF681Q96N22 645 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 OR10A4Q9H209 315 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 CYSLTR2Q9NS75 346 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 FLVCR2Q9UPI3 526 aa11.71□□□□□ -0.53
LIG1-201ENST00000263274 MTCL1Q9Y4B5 1905 aaKnown RBP11.71□□□□□ -0.54
LIG1-201ENST00000263274 FLRT2O43155 660 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 CHP2O43745 196 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 SOX30O94993 753 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 DNASE1P24855 282 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 HTR2AP28223 471 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 SOX2P48431 317 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 ZIC1Q15915 447 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 SSX6Q7RTT6 188 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 PARGQ86W56 976 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 GATSQ8NAP1 163 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 THAP4Q8WY91 577 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 ZNF707Q96C28 371 aaPredicted RBP11.71□□□□□ -0.54
LIG1-201ENST00000263274 OR14A2Q96R54 314 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 GLTPQ9NZD2 209 aa11.71□□□□□ -0.54
LIG1-201ENST00000263274 EXOGQ9Y2C4 368 aaKnown RBP11.71□□□□□ -0.54
LIG1-201ENST00000263274 KHDRBS3O75525 346 aaKnown RBP11.7□□□□□ -0.54
LIG1-201ENST00000263274 PDGFAP04085 211 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 H2AFB2P0C5Z0 115 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 CFL1P23528 166 aaKnown RBP11.7□□□□□ -0.54
LIG1-201ENST00000263274 ERVK-21P61565 698 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 RUNX3Q13761 415 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 GALEQ14376 348 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 HYAL4Q2M3T9 481 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 DEFB110Q30KQ9 67 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 AMZ1Q400G9 498 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 ZNF542PQ5EBM4 170 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 LAMTOR1Q6IAA8 161 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 PYHIN1Q6K0P9 492 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 VN1R4Q7Z5H5 301 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 ZNF485Q8NCK3 441 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 GALNT11Q8NCW6 608 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 OR2T35Q8NGX2 323 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 PEX11GQ96HA9 241 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 GAL3ST1Q99999 423 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 CCDC3Q9BQI4 270 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 GTPBP2Q9BX10 602 aaKnown RBP11.7□□□□□ -0.54
LIG1-201ENST00000263274 HDAC8Q9BY41 377 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 PITHD1Q9GZP4 211 aaPredicted RBP11.7□□□□□ -0.54
LIG1-201ENST00000263274 AUNIPQ9H7T9 357 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 OR6C2Q9NZP2 312 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 CIB4A0PJX0 185 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 OR6C74A6NCV1 312 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 ACOD1A6NK06 481 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 SGK494L7N484 410 aa11.7□□□□□ -0.54
LIG1-201ENST00000263274 RNGTTO60942 597 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms