RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 ULK3Q6PHR2 472 aa24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 PIWIL3Q7Z3Z3 882 aaKnown RBP24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 GDF7Q7Z4P5 450 aa24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 FAR1Q8WVX9 515 aa24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 DNAJA4Q8WW22 397 aaPredicted RBP24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 BBC3Q96PG8 261 aaPredicted RBP24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 PIP5K1AQ99755 562 aa24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 FNDC11Q9BVV2 318 aa24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 TMEM185BQ9H7F4 350 aa24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 TESMINQ9Y4I5 508 aa24.64■■□□□ 1.53
CHMP4B-201ENST00000217402 KMT2BQ9UMN6 2715 aaPredicted RBP24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 TRGV5A0A0B4J1U4 118 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 OR5F1O95221 314 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 PEPDP12955 493 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 PTNP21246 168 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 FUT4P22083 530 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 HTR3AP46098 478 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 HSF1Q00613 529 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 ATG4DQ86TL0 474 aaPredicted RBP24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 ATP6V1C2Q8NEY4 427 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 POLR2J2Q9GZM3 115 aaKnown RBP24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 POLR2J3Q9H1A7 115 aaKnown RBP24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 ZFYVE26Q68DK2 2539 aa24.63■■□□□ 1.53
CHMP4B-201ENST00000217402 PRRC2CQ9Y520 2896 aaKnown RBP24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 TMED7-TICAM2A0A0A6YYA0 188 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 H3BML4 177 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 PRSS23O95084 383 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 ADH6P28332 368 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 IFNA8P32881 189 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 MLLT10P55197 1068 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 DLX5P56178 289 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 ZNF324BQ6AW86 544 aaPredicted RBP24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 TRILQ7L0X0 811 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 LSM14AQ8ND56 463 aaKnown RBP24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 PAPD5Q8NDF8 572 aaKnown RBP24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 NEIL3Q8TAT5 605 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 DUS3LQ96G46 650 aaKnown RBP24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 TNFRSF10DQ9UBN6 386 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 ACAD8Q9UKU7 415 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 TMED7Q9Y3B3 224 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 ZNF337Q9Y3M9 751 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 AP4S1Q9Y587 144 aa24.62■■□□□ 1.53
CHMP4B-201ENST00000217402 ELOA3DA6NLF2 546 aaPredicted RBP24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 EFNA2O43921 213 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 TIPRLO75663 272 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 IGHG3P01860 377 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 CXCR1P25024 350 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 APOBEC1P41238 236 aaKnown RBP24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 GFRA1P56159 465 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 SPIBQ01892 262 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 ELOA3BQ3SY89 546 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 ADGRG3Q86Y34 549 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 OFCC1Q8IZS5 231 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 ELOA3Q8NG57 546 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 SMPDL3BQ92485 455 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 GPR137Q96N19 417 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 ZNF347Q96SE7 839 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 YY1AP1Q9H869 796 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 AGPAT4Q9NRZ5 378 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 CHRNA9Q9UGM1 479 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 PRDM4Q9UKN5 801 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 FREM3P0C091 2139 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 CHP2O43745 196 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 LYPD3O95274 346 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 OPN1LWP04000 364 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 HOXB6P17509 224 aaKnown RBP24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 GCKP35557 465 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 ST3GAL3Q11203 375 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 AAGABQ6PD74 315 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 NMNAT1Q9HAN9 279 aaPredicted RBP24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 SPRR3Q9UBC9 169 aa24.61■■□□□ 1.53
CHMP4B-201ENST00000217402 ZNHIT1O43257 154 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 SUSD5O60279 629 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 HCN1O60741 890 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 ELK4P28324 431 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 RRM2P31350 389 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 STARP49675 285 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 SELENBP1Q13228 472 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 SWT1Q5T5J6 900 aaKnown RBP24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 WDR88Q6ZMY6 472 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 ZNF605Q86T29 641 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 NKAIN4Q8IVV8 208 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 OR52J3Q8NH60 311 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 STMN2Q93045 179 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 SLC38A4Q969I6 547 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 SERINC1Q9NRX5 453 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 MAN2C1Q9NTJ4 1040 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 ARMC1Q9NVT9 282 aa24.6■■□□□ 1.53
CHMP4B-201ENST00000217402 MED12Q93074 2177 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 TMEM72A0PK05 275 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 CST1P01037 141 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 H1F0P07305 194 aaKnown RBP24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 PNMTP11086 282 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 POU3F2P20265 443 aaPredicted RBP24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 DCST1Q5T197 706 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 C3orf33Q6P1S2 294 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 C10orf67Q8IYJ2 551 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 LILRA2Q8N149 483 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 PIK3C3Q8NEB9 887 aa24.59■■□□□ 1.53
CHMP4B-201ENST00000217402 PRSS27Q9BQR3 290 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms