RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 DOCK10Q96BY6 2186 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 G3V3Y1 287 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 NKX2-8O15522 239 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 LYNP07948 512 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 LIPCP11150 499 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 ELK4P28324 431 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 CASP3P42574 277 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 TMED10P49755 219 aaKnown RBP18.33■□□□□ 0.52
CLN3-250ENST00000636839 CHN2P52757 468 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 ALDH6A1Q02252 535 aaKnown RBP18.33■□□□□ 0.52
CLN3-250ENST00000636839 CHAF1BQ13112 559 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 PTGES3Q15185 160 aaKnown RBP18.33■□□□□ 0.52
CLN3-250ENST00000636839 ZNF691Q5VV52 312 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 IGF2-ASQ6U949 168 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 ZNF563Q8TA94 476 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 KIAA1143Q96AT1 154 aaPredicted RBP18.33■□□□□ 0.52
CLN3-250ENST00000636839 NR1H4Q96RI1 486 aaPredicted RBP18.33■□□□□ 0.52
CLN3-250ENST00000636839 EGLN3Q9H6Z9 239 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 GMPPBQ9Y5P6 360 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 MED13Q9UHV7 2174 aa18.33■□□□□ 0.52
CLN3-250ENST00000636839 EIF4E2O60573 245 aaKnown RBP18.32■□□□□ 0.52
CLN3-250ENST00000636839 SMNDC1O75940 238 aaKnown RBP eCLIP18.32■□□□□ 0.52
CLN3-250ENST00000636839 SLC34A2O95436 690 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 CDH2P19022 906 aaPredicted RBP18.32■□□□□ 0.52
CLN3-250ENST00000636839 CCNA2P20248 432 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 ISL1P61371 349 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 FOXC1Q12948 553 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 RTP5Q14D33 572 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 MEP1AQ16819 746 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 WBP2NLQ6ICG8 309 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 LAIR2Q6ISS4 152 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 H3F3CQ6NXT2 135 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 POMZP3Q6PJE2 187 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 MDGA2Q7Z553 956 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 ARMC10Q8N2F6 343 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 PARP8Q8N3A8 854 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 TMEM156Q8N614 296 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 OR5W2Q8NH69 310 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 B4GALNT2Q8NHY0 566 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 ZNF426Q9BUY5 554 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 DPH1Q9BZG8 443 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 PLA2G12AQ9BZM1 189 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 EML6Q6ZMW3 1958 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 KLF4O43474 513 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 CCL3P10147 92 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 PRKAR1AP10644 381 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 IFI30P13284 250 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 OSMP13725 252 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 CRISP1P54107 249 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 CD47Q08722 323 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 ACER2Q5QJU3 275 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 IQCF1Q8N6M8 205 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 GNPDA2Q8TDQ7 276 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 GPR119Q8TDV5 335 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 DNAJA3Q96EY1 480 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 IL20RAQ9UHF4 553 aa18.32■□□□□ 0.52
CLN3-250ENST00000636839 LAMA5O15230 3695 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 LRRN3E7EW58 273 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 H3BN98 237 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 TACR3P29371 465 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 P2RX1P51575 399 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 OPN5Q6U736 354 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 ARSKQ6UWY0 536 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 ATG4DQ86TL0 474 aaPredicted RBP18.31■□□□□ 0.52
CLN3-250ENST00000636839 C8orf59Q8N0T1 100 aaPredicted RBP18.31■□□□□ 0.52
CLN3-250ENST00000636839 BEST3Q8N1M1 668 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 LINC00471Q8N535 108 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 CNIH3Q8TBE1 160 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 HRASLS5Q96KN8 279 aa18.31■□□□□ 0.52
CLN3-250ENST00000636839 IGKV1D-42A0A075B6H8 117 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 A0A087WUJ7 227 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 TPD52P55327 224 aaPredicted RBP18.3■□□□□ 0.52
CLN3-250ENST00000636839 C17orf67Q0P5P2 114 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 QPRTQ15274 297 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 THAP5Q7Z6K1 395 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 ZNF786Q8N393 782 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 TOR1AIP2Q8NFQ8 470 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 PROK2Q9HC23 129 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 RASSF1Q9NS23 344 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 SLC1A3P43003 542 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 IL5RAQ01344 420 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 PRKCDQ05655 676 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 TSPAN31Q12999 210 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 CD300LDQ6UXZ3 194 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 OR8D4Q8NGM9 314 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 DNAJA4Q8WW22 397 aaPredicted RBP18.3■□□□□ 0.52
CLN3-250ENST00000636839 BPIFA2Q96DR5 249 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 PITX2Q99697 317 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 ADAM19Q9H013 955 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 ENKD1Q9H0I2 346 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 SH2D2AQ9NP31 389 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 SELENONQ9NZV5 590 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 FBXL2Q9UKC9 423 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 MED31Q9Y3C7 131 aa18.3■□□□□ 0.52
CLN3-250ENST00000636839 SHISA8B8ZZ34 492 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 TCEA1P23193 301 aaKnown RBP18.29■□□□□ 0.52
CLN3-250ENST00000636839 ITGA3P26006 1051 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 IFNGR2P38484 337 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 CRYZQ08257 329 aaKnown RBP18.29■□□□□ 0.52
CLN3-250ENST00000636839 CLN3Q13286 438 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms