RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MMACHCQ9Y4U1 282 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 CLCA3PQ9Y6N3 262 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 LY6G6EA0A0G2JKS1 128 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 TMEM129A0AVI4 362 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 C19orf67A6NJJ6 358 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 SNTNA6NMZ2 147 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 SULT1C4O75897 302 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 PPP1R3DO95685 299 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 CPEP16870 476 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 FBLP22087 321 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 PSMA1P25786 263 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 SLC9A3P48764 834 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 NSDHLQ15738 373 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 ZNF791Q3KP31 576 aaPredicted RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 TIMM50Q3ZCQ8 353 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 GXYLT1Q4G148 440 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 WDR74Q6RFH5 385 aaPredicted RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 QSOX2Q6ZRP7 698 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 DCDC5Q6ZRR9 648 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 LANCL3Q6ZV70 420 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 ZNF550Q7Z398 422 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 PRSS42Q7Z5A4 293 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 UBALD2Q8IYN6 164 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 CENPSQ8N2Z9 138 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 S100ZQ8WXG8 99 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 RFKQ969G6 155 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 ABTB1Q969K4 478 aaPredicted RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 ADIPOR1Q96A54 375 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 GAL3ST4Q96RP7 486 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 PELOQ9BRX2 385 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 TEX12Q9BXU0 123 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 PALMDQ9NP74 551 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 SLC22A11Q9NSA0 550 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 TMEM5Q9Y2B1 443 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 U3KQA8 63 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 ZDBF2Q9HCK1 2354 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 ADAMTS9Q9P2N4 1935 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 TCRBV16S1A1N1A0A5B0 115 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 RCBTB2O95199 551 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 EPHA8P29322 1005 aaPredicted RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 PPICP45877 212 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 RPS25P62851 125 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 ARHGAP40Q5TG30 622 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 FNDC7Q5VTL7 733 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 FAAH2Q6GMR7 532 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 NIPAL3Q6P499 406 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 ULK3Q6PHR2 472 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 C9orf40Q8IXQ3 194 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 CARFQ8N187 725 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 SLC38A9Q8NBW4 561 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 OR7G1Q8NGA0 311 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 OR2I1PQ8NGU4 316 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 SMAP2Q8WU79 429 aaPredicted RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 KISS1RQ969F8 398 aaPredicted RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 SECISBP2Q96T21 854 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 TM9SF2Q99805 663 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 KCNS3Q9BQ31 491 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 ARHGAP9Q9BRR9 750 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 VN1R1Q9GZP7 353 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 ZNF768Q9H5H4 540 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 TOR4AQ9NXH8 423 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 CCDC59Q9P031 241 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 SEC14L4Q9UDX3 406 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 SERTAD3Q9UJW9 196 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 MKL2Q9ULH7 1088 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 STUB1Q9UNE7 303 aa13.28□□□□□ -0.28
VRK3-217ENST00000599538 EXOGQ9Y2C4 368 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 SF3B6Q9Y3B4 125 aaKnown RBP13.28□□□□□ -0.28
VRK3-217ENST00000599538 A0A1B0GX78 115 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 A0A1W2PQM1 296 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 TIAF1O95411 115 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 KLHL12Q53G59 568 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 PMS2CLQ68D20 193 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 SLC37A3Q8NCC5 494 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 OR9Q1Q8NGQ5 310 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 C3orf49Q96BT1 292 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 SLC46A1Q96NT5 459 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 DCLRE1CQ96SD1 692 aaKnown RBP13.27□□□□□ -0.28
VRK3-217ENST00000599538 ADOQ96SZ5 270 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 TBX5Q99593 518 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 CMC2Q9NRP2 79 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 CHCHD3Q9NX63 227 aaKnown RBP13.27□□□□□ -0.28
VRK3-217ENST00000599538 ERVK13-1Q9NX77 482 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 GALNT8Q9NY28 637 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 H2AFY2Q9P0M6 372 aaPredicted RBP13.27□□□□□ -0.28
VRK3-217ENST00000599538 B3GNT3Q9Y2A9 372 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 EXOSC1Q9Y3B2 195 aaKnown RBP13.27□□□□□ -0.28
VRK3-217ENST00000599538 PCNX3Q9H6A9 2034 aa13.27□□□□□ -0.28
VRK3-217ENST00000599538 J3QRE1 110 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 CTDSP2O14595 271 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 POLR1CO15160 346 aaPredicted RBP13.27□□□□□ -0.29
VRK3-217ENST00000599538 GMFGO60234 142 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 HCN1O60741 890 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 REM1O75628 298 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 UTS2O95399 124 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 IGHA1P01876 353 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 GYPBP06028 91 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 TSPAN19P0C672 248 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 MST1P26927 711 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 ATP6V1E1P36543 226 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms